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view test-data/test-constellations/definitions/cB.1.351.json @ 0:6ddf5a9ce4a5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lineagespot commit 0bc6ed15054577af1089d55ef9aa1071d122eb6b
author iuc
date Tue, 08 Aug 2023 15:12:08 +0000
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{
    "label": "Beta (B.1.351-like)",
	"description": "Defining of lineage B.1.351",
	"sources": [
		"https://www.medrxiv.org/content/10.1101/2020.12.21.20248640v1"
	],
    "type": "variant",
    "variant": {
		"Pango_lineages": [
			"B.1.351"
		],
	    "mrca_lineage": "B.1.351",
		"PHE_label": "VOC-20DEC-02",
		"WHO_label": "Beta",
		"representative_genome": ""
    },
	"tags": [
		"B.1.351",
		"VOC-20DEC-02",
		"VOC202012/02",
		"Beta",
		"501.V2",
		"20H",
		"GH"
	],
    "sites": [
        "NSP2:T85I",
        "ORF1ab:K1655N",
        "ORF1ab:K3353R",
        "S:D80A",
        "S:D215G",
        "S:E484K",
        "S:N501Y",
        "S:A701V",
        "ORF3a:Q57H",
        "ORF3a:S171L",
        "E:P71L",
        "N:T205I",
        "del:22280:9",
        "del:11287:9"
    ],
    "rules": {
        "min_alt": 6,
        "max_ref": 3
    }
}