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annotate test-data/advanced.assembly_correspondence.tsv @ 0:7acd9ade2dd1 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/links commit f15e5bb67b7a212ecd8c98e816c80e22d3b7a0cb"
author iuc
date Wed, 23 Feb 2022 08:25:55 +0000
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7acd9ade2dd1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/links commit f15e5bb67b7a212ecd8c98e816c80e22d3b7a0cb"
iuc
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1 #This correspondence links_output.assembly_correspondence.tsv file lists the scaffold ID and contig ID used by LINKS (reported in the .scaffolds file), with the original contig name in the provided assembly file (-f sequences.fasta.gz)
7acd9ade2dd1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/links commit f15e5bb67b7a212ecd8c98e816c80e22d3b7a0cb"
iuc
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2 LINKS_scaffold_ID LINKS_contig_ID original_name orientation(f=forward/r=reverse) number_of_links links_ratio gap_or_overlap(-)
7acd9ade2dd1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/links commit f15e5bb67b7a212ecd8c98e816c80e22d3b7a0cb"
iuc
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diff changeset
3 scaffold1 1 658 358719 3056919 148-,...,484+ f 26 0 -71
7acd9ade2dd1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/links commit f15e5bb67b7a212ecd8c98e816c80e22d3b7a0cb"
iuc
parents:
diff changeset
4 scaffold1 2 669 48119 389147 223-,...,554- r NA NA NA
7acd9ade2dd1 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/links commit f15e5bb67b7a212ecd8c98e816c80e22d3b7a0cb"
iuc
parents:
diff changeset
5 scaffold2 3 688 226353 2008589 541+,567+,217- f NA NA NA