Mercurial > repos > iuc > lofreq_alnqual
diff test-data/call-out1.vcf @ 3:e61c9ac190ad draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit 0cec5f95ad0b141a9cc5be00be6d2574609b661a"
author | iuc |
---|---|
date | Fri, 29 May 2020 15:28:33 -0400 |
parents | 606542a18f82 |
children | e0e2fd665102 |
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--- a/test-data/call-out1.vcf Sat Mar 21 10:51:11 2020 -0400 +++ b/test-data/call-out1.vcf Fri May 29 15:28:33 2020 -0400 @@ -1,6 +1,6 @@ ##fileformat=VCFv4.0 -##fileDate=20191125 -##source=lofreq call --verbose --ref reference.fa --sig 0.01 --bonf dynamic --no-default-filter -r pBR322:1-2180 -o /tmp/lofreq2_call_parallel3mrmthi_/0.vcf.gz alignments.bam +##fileDate=20200529 +##source=lofreq call --verbose --ref reference.fa --min-cov 1 --max-depth 1000000 --min-bq 6 --min-alt-bq 6 --min-mq 0 --max-mq 255 --src-qual --ign-vcf ign0.vcf --def-nm-q 40 --min-jq 0 --min-alt-jq 0 --def-alt-jq 0 --sig 0.01 --bonf dynamic --no-default-filter -r pBR322:1-2180 -o /tmp/lofreq2_call_parallelqgn6kxdr/0.vcf.gz reads.bam ##reference=reference.fa ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth"> ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency">