Mercurial > repos > iuc > lofreq_alnqual
view test-data/call-out1.vcf @ 5:09d6e4693887 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit c1fda24943cf04866d408133ffb6aabf4a90866b"
author | iuc |
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date | Mon, 05 Oct 2020 20:14:58 +0000 |
parents | e0e2fd665102 |
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##fileformat=VCFv4.0 ##fileDate=20200615 ##source=lofreq call --verbose --ref reference.fa --sig 1 --bonf 1 --no-default-filter --no-default-filter -r pBR322:1-2180 -o /tmp/tmpe0171355/job_working_directory/000/28/working/pp-tmp/lofreq2_call_parallell2yprl2k/0.vcf.gz reads.bam ##reference=reference.fa ##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw Depth"> ##INFO=<ID=AF,Number=1,Type=Float,Description="Allele Frequency"> ##INFO=<ID=SB,Number=1,Type=Integer,Description="Phred-scaled strand bias at this position"> ##INFO=<ID=DP4,Number=4,Type=Integer,Description="Counts for ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> ##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> ##INFO=<ID=CONSVAR,Number=0,Type=Flag,Description="Indicates that the variant is a consensus variant (as opposed to a low frequency variant)."> ##INFO=<ID=HRUN,Number=1,Type=Integer,Description="Homopolymer length to the right of report indel position"> ##FILTER=<ID=min_snvqual_38,Description="Minimum SNV Quality (Phred) 38"> ##FILTER=<ID=min_indelqual_20,Description="Minimum Indel Quality (Phred) 20"> ##FILTER=<ID=min_dp_10,Description="Minimum Coverage 10"> ##FILTER=<ID=sb_fdr,Description="Strand-Bias Multiple Testing Correction: fdr corr. pvalue > 0.001000"> ##FILTER=<ID=min_snvqual_38,Description="Minimum SNV Quality (Phred) 38"> ##FILTER=<ID=min_indelqual_20,Description="Minimum Indel Quality (Phred) 20"> #CHROM POS ID REF ALT QUAL FILTER INFO pBR322 1134 . C T 49314 PASS DP=1767;AF=1.000000;SB=0;DP4=0,0,910,857