Mercurial > repos > iuc > lofreq_filter
comparison lofreq_filter.xml @ 1:fdba1586551d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit 9e41ac63171c3e3a6fd2b4d018d0c60c9f1fbae1"
| author | iuc |
|---|---|
| date | Fri, 31 Jan 2020 06:18:08 -0500 |
| parents | 6f9ffff040ce |
| children | 950d1d49d678 |
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| 0:6f9ffff040ce | 1:fdba1586551d |
|---|---|
| 1 <tool id="lofreq_filter" name="Lofreq filter" version="@TOOL_VERSION@"> | 1 <tool id="lofreq_filter" name="Lofreq filter" version="@TOOL_VERSION@+galaxy1"> |
| 2 <description>called variants posteriorly</description> | 2 <description>called variants posteriorly</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 <xml name="snvqual_filter_config"> | 5 <xml name="snvqual_filter_config"> |
| 6 <conditional name="snvqual_filter"> | 6 <conditional name="snvqual_filter"> |
| 139 label="Maximum coverage" | 139 label="Maximum coverage" |
| 140 help="The maximum coverage at a site allowed to keep variants" /> | 140 help="The maximum coverage at a site allowed to keep variants" /> |
| 141 </section> | 141 </section> |
| 142 <section name="af" title="Allele frequency filter options" expanded="True" | 142 <section name="af" title="Allele frequency filter options" expanded="True" |
| 143 help="You can specify a range of acceptable allele frequencies at variant sites by setting minimum and maximum AF values. Set either value to zero to make the range unbounded on the corresponding side, or disable filtering based on allele frequency by setting both values to zero."> | 143 help="You can specify a range of acceptable allele frequencies at variant sites by setting minimum and maximum AF values. Set either value to zero to make the range unbounded on the corresponding side, or disable filtering based on allele frequency by setting both values to zero."> |
| 144 <param argument="-a" name="af_min" type="float" min="0" value="0" | 144 <param argument="-a" name="af_min" type="float" min="0" max="1" value="0" |
| 145 label="Minimum allele frequency" | 145 label="Minimum allele frequency" |
| 146 help="To keep a variant its allele needs to be observed at this frequency at least." /> | 146 help="To keep a variant its allele needs to be observed at this frequency at least." /> |
| 147 <param argument="-A" name="af_max" type="float" min="0" value="0" | 147 <param argument="-A" name="af_max" type="float" min="0" max="1" value="0" |
| 148 label="Maximum allele frequency" | 148 label="Maximum allele frequency" |
| 149 help="To keep a variant its allele is allowed to be observed at this frequency at most." /> | 149 help="To keep a variant its allele is allowed to be observed at this frequency at most." /> |
| 150 </section> | 150 </section> |
| 151 <section name="sb" title="Strand bias filter options" expanded="True"> | 151 <section name="sb" title="Strand bias filter options" expanded="True"> |
| 152 <conditional name="sb_filter"> | 152 <conditional name="sb_filter"> |