# HG changeset patch
# User iuc
# Date 1580469488 18000
# Node ID fdba1586551d2d4a61647d0af505738a94b5d6a9
# Parent  6f9ffff040ceb52d2ca352a9c6dc7dcda9b3cab4
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq commit 9e41ac63171c3e3a6fd2b4d018d0c60c9f1fbae1"

diff -r 6f9ffff040ce -r fdba1586551d lofreq_filter.xml
--- a/lofreq_filter.xml	Tue Dec 17 17:26:32 2019 -0500
+++ b/lofreq_filter.xml	Fri Jan 31 06:18:08 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="lofreq_filter" name="Lofreq filter" version="@TOOL_VERSION@">
+<tool id="lofreq_filter" name="Lofreq filter" version="@TOOL_VERSION@+galaxy1">
     <description>called variants posteriorly</description>
     <macros>
         <import>macros.xml</import>
@@ -141,10 +141,10 @@
         </section>
         <section name="af" title="Allele frequency filter options" expanded="True"
         help="You can specify a range of acceptable allele frequencies at variant sites by setting minimum and maximum AF values. Set either value to zero to make the range unbounded on the corresponding side, or disable filtering based on allele frequency by setting both values to zero.">
-            <param argument="-a" name="af_min" type="float" min="0" value="0"
+            <param argument="-a" name="af_min" type="float" min="0" max="1" value="0"
             label="Minimum allele frequency"
             help="To keep a variant its allele needs to be observed at this frequency at least." />
-            <param argument="-A" name="af_max" type="float" min="0" value="0"
+            <param argument="-A" name="af_max" type="float" min="0" max="1" value="0"
             label="Maximum allele frequency"
             help="To keep a variant its allele is allowed to be observed at this frequency at most." />
         </section>
diff -r 6f9ffff040ce -r fdba1586551d test-data/viterbi-out1.bam
Binary file test-data/viterbi-out1.bam has changed