Mercurial > repos > iuc > macs2

annotate test-data/predictd_on_ChIP_200K_and_Control_200K.txt @ 14:c16dbe4e2db2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit c9c5c4dd15aed950ed9b43a294ce6c41f5732a23
author iuc
date Mon, 06 Aug 2018 10:41:57 -0400
parents 6d4babad010f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
1 # read alignment files...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
2 # read treatment tags...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
3 Detected format is
fe62ba547975 Uploaded
iuc
parents:
diff changeset
4 Detected format is
fe62ba547975 Uploaded
iuc
parents:
diff changeset
5 tag size is determined as 86 bps
fe62ba547975 Uploaded
iuc
parents:
diff changeset
6 # tag size = 86
fe62ba547975 Uploaded
iuc
parents:
diff changeset
7 # total tags in alignment file
fe62ba547975 Uploaded
iuc
parents:
diff changeset
8 # Build Peak Model...
3
6d4babad010f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
iuc
parents: 0
diff changeset
9 #2 looking for paired plus/minus strand peaks...
0
fe62ba547975 Uploaded
iuc
parents:
diff changeset
10 #2 number of paired peaks
fe62ba547975 Uploaded
iuc
parents:
diff changeset
11 start model_add_line...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
12 start X-correlation...
fe62ba547975 Uploaded
iuc
parents:
diff changeset
13 end of X-cor
fe62ba547975 Uploaded
iuc
parents:
diff changeset
14 # finished!
fe62ba547975 Uploaded
iuc
parents:
diff changeset
15 # predicted fragment length is 284 bps
fe62ba547975 Uploaded
iuc
parents:
diff changeset
16 # alternative fragment length(s) may be 284 bps
fe62ba547975 Uploaded
iuc
parents:
diff changeset
17 # Generate R script for model