Mercurial > repos > iuc > macs2
comparison macs2_callpeak.xml @ 17:424aefbd7777 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e90e79e18362561d0060d2c162f1938feebdbc29
| author | iuc |
|---|---|
| date | Thu, 25 Apr 2019 17:49:05 -0400 |
| parents | 495a4173006f |
| children | 640d3af5d833 |
comparison
equal
deleted
inserted
replaced
| 16:495a4173006f | 17:424aefbd7777 |
|---|---|
| 1 <tool id="macs2_callpeak" name="MACS2 callpeak" version="@VERSION_STRING@.5" profile="17.09"> | 1 <tool id="macs2_callpeak" name="MACS2 callpeak" version="@VERSION_STRING@.6" profile="17.09"> |
| 2 <description>Call peaks from alignment results</description> | 2 <description>Call peaks from alignment results</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macs2_macros.xml</import> | 4 <import>macs2_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"> | 6 <expand macro="requirements"> |
| 136 <param name="t_multi_select" type="select" label="Are you pooling Treatment Files?" help="For more information, see Help section below" > | 136 <param name="t_multi_select" type="select" label="Are you pooling Treatment Files?" help="For more information, see Help section below" > |
| 137 <option value="No" selected="True">No</option> | 137 <option value="No" selected="True">No</option> |
| 138 <option value="Yes">Yes</option> | 138 <option value="Yes">Yes</option> |
| 139 </param> | 139 </param> |
| 140 <when value="No" > | 140 <when value="No" > |
| 141 <param name="input_treatment_file" argument="-t" type="data" format="bam,sam,bed" label="ChIP-Seq Treatment File" /> | 141 <param name="input_treatment_file" argument="-t" type="data" format="bam,bed" label="ChIP-Seq Treatment File" /> |
| 142 </when> | 142 </when> |
| 143 <when value="Yes"> | 143 <when value="Yes"> |
| 144 <param name="input_treatment_file" argument="-t" type="data" format="bam,sam,bed" multiple="true" label="ChIP-Seq Treatment File" /> | 144 <param name="input_treatment_file" argument="-t" type="data" format="bam,bed" multiple="true" label="ChIP-Seq Treatment File" /> |
| 145 </when> | 145 </when> |
| 146 </conditional> | 146 </conditional> |
| 147 | 147 |
| 148 <conditional name="control"> | 148 <conditional name="control"> |
| 149 <param name="c_select" type="select" label="Do you have a Control File?" > | 149 <param name="c_select" type="select" label="Do you have a Control File?" > |
| 155 <param name="c_multi_select" type="select" label="Are you pooling Control Files?" help="For more information, see Help section below" > | 155 <param name="c_multi_select" type="select" label="Are you pooling Control Files?" help="For more information, see Help section below" > |
| 156 <option value="No" selected="True">No</option> | 156 <option value="No" selected="True">No</option> |
| 157 <option value="Yes">Yes</option> | 157 <option value="Yes">Yes</option> |
| 158 </param> | 158 </param> |
| 159 <when value="No" > | 159 <when value="No" > |
| 160 <param name="input_control_file" argument="-c" type="data" format="bam,sam,bed" label="ChIP-Seq Control File" /> | 160 <param name="input_control_file" argument="-c" type="data" format="bam,bed" label="ChIP-Seq Control File" /> |
| 161 </when> | 161 </when> |
| 162 <when value="Yes"> | 162 <when value="Yes"> |
| 163 <param name="input_control_file" argument="-c" type="data" format="bam,sam,bed" multiple="true" label="ChIP-Seq Control File" /> | 163 <param name="input_control_file" argument="-c" type="data" format="bam,bed" multiple="true" label="ChIP-Seq Control File" /> |
| 164 </when> | 164 </when> |
| 165 </conditional> | 165 </conditional> |
| 166 </when> | 166 </when> |
| 167 <when value="No" /> | 167 <when value="No" /> |
| 168 </conditional> | 168 </conditional> |