comparison macs2_filterdup.xml @ 17:424aefbd7777 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e90e79e18362561d0060d2c162f1938feebdbc29

16:495a4173006f

<tool id="macs2_filterdup" name="MACS2 filterdup" version="@VERSION_STRING@.0">
    <description>Remove duplicate reads at the same position</description>
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <expand macro="requirements" />

            --keep-dup '${ keep_dup_options.keep_dup_options_selector }'
        #end if
    ]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" />
        <expand macro="conditional_effective_genome_size" />
        <expand macro="tag_size" />
        <param name="pvalue" type="text" value="1e-5" label="Pvalue cutoff for binomial distribution test" help="Default=1e-5 (--pvalue)" />
        <expand macro="keep_duplicates" />

17:424aefbd7777

<tool id="macs2_filterdup" name="MACS2 filterdup" version="@VERSION_STRING@.1">
    <description>Remove duplicate reads at the same position</description>
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <expand macro="requirements" />

            --keep-dup '${ keep_dup_options.keep_dup_options_selector }'
        #end if
    ]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="bam,bed" label="Sequencing alignment file" />
        <expand macro="conditional_effective_genome_size" />
        <expand macro="tag_size" />
        <param name="pvalue" type="text" value="1e-5" label="Pvalue cutoff for binomial distribution test" help="Default=1e-5 (--pvalue)" />
        <expand macro="keep_duplicates" />