Mercurial > repos > iuc > macs2
comparison macs2_bdgcmp.xml @ 9:acbd3fb47f90 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
| author | iuc |
|---|---|
| date | Thu, 25 Jan 2018 02:11:52 -0500 |
| parents | beb902da6e5f |
| children | 640d3af5d833 |
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| 8:e8a060164e11 | 9:acbd3fb47f90 |
|---|---|
| 4 <import>macs2_macros.xml</import> | 4 <import>macs2_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <expand macro="version_command" /> | 8 <expand macro="version_command" /> |
| 9 <command> | 9 <command><![CDATA[ |
| 10 <![CDATA[ | 10 @home_dir@ |
| 11 macs2 bdgcmp | 11 macs2 bdgcmp |
| 12 -t '${ infile_treatment }' | 12 -t '${ infile_treatment }' |
| 13 -c '${ infile_control }' | 13 -c '${ infile_control }' |
| 14 | 14 |
| 15 -m '${ bdgcmp_options.bdgcmp_options_selector }' | 15 -m '${ bdgcmp_options.bdgcmp_options_selector }' |
| 16 #if str($bdgcmp_options.bdgcmp_options_selector) in ['FE', 'logFE', 'logLR']: | 16 #if str($bdgcmp_options.bdgcmp_options_selector) in ['FE', 'logFE', 'logLR']: |
| 17 -p '${ bdgcmp_options.pseudocount }' | 17 -p '${ bdgcmp_options.pseudocount }' |
| 18 #end if | 18 #end if |
| 19 -o '${ outfile }' | 19 -o '${ outfile }' |
| 20 ]]> | 20 ]]></command> |
| 21 </command> | |
| 22 <inputs> | 21 <inputs> |
| 23 <param name="infile_treatment" type="data" format="bedgraph" label="Treatment bedGraph file" /> | 22 <param name="infile_treatment" type="data" format="bedgraph" label="Treatment bedGraph file" /> |
| 24 <param name="infile_control" type="data" format="bedgraph" label="Control bedGraph file" /> | 23 <param name="infile_control" type="data" format="bedgraph" label="Control bedGraph file" /> |
| 25 | 24 |
| 26 <conditional name="bdgcmp_options"> | 25 <conditional name="bdgcmp_options"> |