Mercurial > repos > iuc > macs2

comparison macs2_bdgdiff.xml @ 9:acbd3fb47f90 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
author iuc
date Thu, 25 Jan 2018 02:11:52 -0500
parents beb902da6e5f
children 38769345062e
comparison
equal deleted inserted replaced
8:e8a060164e11 9:acbd3fb47f90
6 <expand macro="requirements"> 6 <expand macro="requirements">
7 <requirement type="package" version="4.1.3">gawk</requirement> 7 <requirement type="package" version="4.1.3">gawk</requirement>
8 </expand> 8 </expand>
9 <expand macro="stdio" /> 9 <expand macro="stdio" />
10 <expand macro="version_command" /> 10 <expand macro="version_command" />
11 <command> 11 <command><![CDATA[
12 <![CDATA[ 12 @home_dir@
13 macs2 bdgdiff 13 macs2 bdgdiff
14 --t1 '${ t1 }' 14 --t1 '${ t1 }'
15 --t2 '${ t2 }' 15 --t2 '${ t2 }'
16 --c1 '${ c1 }' 16 --c1 '${ c1 }'
17 --c2 '${ c2 }' 17 --c2 '${ c2 }'
23 -o c1.bed c2.bed both.bed && 23 -o c1.bed c2.bed both.bed &&
24 24
25 awk '!/^track name/' "c1.bed" > '${ output_cond1 }' && 25 awk '!/^track name/' "c1.bed" > '${ output_cond1 }' &&
26 awk '!/^track name/' "c2.bed" > '${ output_cond1 }' && 26 awk '!/^track name/' "c2.bed" > '${ output_cond1 }' &&
27 awk '!/^track name/' "both.bed" > '${ output_both }' 27 awk '!/^track name/' "both.bed" > '${ output_both }'
28 28 ]]></command>
29 ]]>
30 </command>
31 <inputs> 29 <inputs>
32 <param name="t1" type="data" format="bedgraph" label="BedGraph for Treatment experiment 1" /> 30 <param name="t1" type="data" format="bedgraph" label="BedGraph for Treatment experiment 1" />
33 <param name="t2" type="data" format="bedgraph" label="BedGraph for Treatment experiment 2" /> 31 <param name="t2" type="data" format="bedgraph" label="BedGraph for Treatment experiment 2" />
34 32
35 <param name="c1" type="data" format="bedgraph" label="BedGraph for Control experiment 1" /> 33 <param name="c1" type="data" format="bedgraph" label="BedGraph for Control experiment 1" />