comparison macs2_bdgcmp.xml @ 2:bfe57d6e0c4c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 63955994af5090ec444c03c221df0012d5ae4e74

1:859c982b1f7f

<tool id="macs2_bdgcmp" name="MACS2 bdgcmp" version="@VERSION_STRING@.0">
    <description>Deduct noise by comparing two signal tracks in bedGraph</description>
    <expand macro="requirements" />
    <expand macro="version_command" />
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <command>
        macs2 bdgcmp
            -t "${ infile_treatment }"
            -c "${ infile_control }"

                -p "${ bdgcmp_options.pseudocount }"
            #end if
            -o "${ outfile }"

    </command>
    <expand macro="stdio" />
    <inputs>
        <param name="infile_treatment" type="data" format="bedgraph" label="Treatment bedGraph file" />
        <param name="infile_control" type="data" format="bedgraph" label="Control bedGraph file" />

        <conditional name="bdgcmp_options">

2:bfe57d6e0c4c

<tool id="macs2_bdgcmp" name="MACS2 bdgcmp" version="@VERSION_STRING@.0">
    <description>Deduct noise by comparing two signal tracks in bedGraph</description>
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version_command" />
    <command>
        macs2 bdgcmp
            -t "${ infile_treatment }"
            -c "${ infile_control }"

                -p "${ bdgcmp_options.pseudocount }"
            #end if
            -o "${ outfile }"

    </command>
    <inputs>
        <param name="infile_treatment" type="data" format="bedgraph" label="Treatment bedGraph file" />
        <param name="infile_control" type="data" format="bedgraph" label="Control bedGraph file" />

        <conditional name="bdgcmp_options">