Mercurial > repos > iuc > macs2
comparison macs2_bdgdiff.xml @ 2:bfe57d6e0c4c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 63955994af5090ec444c03c221df0012d5ae4e74
| author | iuc |
|---|---|
| date | Mon, 12 Oct 2015 11:24:39 -0400 |
| parents | fe62ba547975 |
| children | 56e104999978 |
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| 1:859c982b1f7f | 2:bfe57d6e0c4c |
|---|---|
| 1 <tool id="macs2_bdgdiff" name="MACS2 bdgdiff" version="@VERSION_STRING@.0"> | 1 <tool id="macs2_bdgdiff" name="MACS2 bdgdiff" version="@VERSION_STRING@.0"> |
| 2 <description>Differential peak detection based on paired four bedgraph files</description> | 2 <description>Differential peak detection based on paired four bedgraph files</description> |
| 3 <expand macro="requirements" /> | |
| 4 <expand macro="version_command" /> | |
| 5 <macros> | 3 <macros> |
| 6 <import>macs2_macros.xml</import> | 4 <import>macs2_macros.xml</import> |
| 7 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | |
| 7 <expand macro="stdio" /> | |
| 8 <expand macro="version_command" /> | |
| 8 <command> | 9 <command> |
| 9 macs2 bdgdiff | 10 macs2 bdgdiff |
| 10 --t1 "${ infile_pileup_cond1 }" | 11 --t1 "${ infile_pileup_cond1 }" |
| 11 --t2 "${ infile_pileup_cond2 }" | 12 --t2 "${ infile_pileup_cond2 }" |
| 12 --c1 "${ infile_control_cond1 }" | 13 --c1 "${ infile_control_cond1 }" |
| 17 --depth2 "${ depth2 }" | 18 --depth2 "${ depth2 }" |
| 18 --max-gap "${ maxgap }" | 19 --max-gap "${ maxgap }" |
| 19 --o-prefix MACS2 | 20 --o-prefix MACS2 |
| 20 | 21 |
| 21 </command> | 22 </command> |
| 22 <expand macro="stdio" /> | |
| 23 <inputs> | 23 <inputs> |
| 24 <param name="infile_pileup_cond1" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 1" /> | 24 <param name="infile_pileup_cond1" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 1" /> |
| 25 <param name="infile_pileup_cond2" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 2" /> | 25 <param name="infile_pileup_cond2" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 2" /> |
| 26 | 26 |
| 27 <param name="infile_control_cond1" type="data" format="bedgraph" label="MACS control lambda bedGraph for condition 1" /> | 27 <param name="infile_control_cond1" type="data" format="bedgraph" label="MACS control lambda bedGraph for condition 1" /> |