diff macs2_predictd.xml @ 9:acbd3fb47f90 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2

--- a/macs2_predictd.xml	Wed Dec 27 10:18:03 2017 -0500
+++ b/macs2_predictd.xml	Thu Jan 25 02:11:52 2018 -0500
@@ -6,8 +6,8 @@
     <expand macro="requirements"/>
     <expand macro="stdio" />
     <expand macro="version_command" />
-    <command>
-        <![CDATA[
+    <command><![CDATA[
+        @home_dir@
         macs2 predictd
 
         -i ${ ' '.join(["'%s'" % $x for $x in $infiles ]) }
@@ -24,8 +24,7 @@
         &&
 
         Rscript predictd
-        ]]>
-    </command>
+    ]]></command>
     <inputs>
         <param name="infiles" type="data" format="bam,sam,bed" multiple="True"
                label="ChIP-seq alignment file"
@@ -49,7 +48,7 @@
             <param name="band_width" value="300"/>
             <param name="lower" value="5"/>
             <param name="upper" value="50"/>
-            <output name="outfile" file="predictd_on_ChIP_200K_and_Control_200K.txt"/>
+            <output name="outfile" file="predictd_on_ChIP_200K_and_Control_200K.txt" lines_diff="2"/>
             <output name="outfile_image" file="predictd_on_ChIP_200K_and_Control_200K.pdf" compare="sim_size"/>
         </test>
     </tests>