# HG changeset patch
# User iuc
# Date 1525484396 14400
# Node ID 01cded2297b71d76f81e9827fb5679461fcd6906
# Parent  38769345062e9ee97576863dcb6bf250bebd7d28
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 1cf6ca65ca6bbf3553d830f13be1760dcd667cae

diff -r 38769345062e -r 01cded2297b7 macs2_callpeak.xml
--- a/macs2_callpeak.xml	Thu Mar 22 09:43:37 2018 -0400
+++ b/macs2_callpeak.xml	Fri May 04 21:39:56 2018 -0400
@@ -243,34 +243,34 @@
     </inputs>
     <outputs>
         <!--callpeaks output-->
-        <data name="output_tabular" format="tabular" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (Peaks in tabular format)">
+        <data name="output_tabular" format="tabular" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (Peaks in tabular format)">
             <filter> outputs and 'peaks_tabular' in outputs</filter>
         </data>
-        <data name="output_broadpeaks" format="bed" from_work_dir="MACS2_peaks.broadPeak" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (broad Peaks)">
+        <data name="output_broadpeaks" format="bed" from_work_dir="MACS2_peaks.broadPeak" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (broad Peaks)">
             <filter>
             ((
               advanced_options['broad_options']['broad_options_selector'] == "broad"
             ))
             </filter>
         </data>
-        <data name="output_gappedpeaks" format="bed" from_work_dir="MACS2_peaks.gappedPeak" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (gapped Peaks)">
+        <data name="output_gappedpeaks" format="bed" from_work_dir="MACS2_peaks.gappedPeak" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (gapped Peaks)">
             <filter>
             ((
               advanced_options['broad_options']['broad_options_selector'] == "broad"
             ))
             </filter>
         </data>
-        <data name="output_narrowpeaks" format="bed" from_work_dir="MACS2_peaks.narrowPeak" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (narrow Peaks)">
+        <data name="output_narrowpeaks" format="bed" from_work_dir="MACS2_peaks.narrowPeak" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (narrow Peaks)">
             <filter>
             ((
               advanced_options['broad_options']['broad_options_selector'] == "nobroad"
             ))
             </filter>
         </data>
-        <data name="output_summits" format="bed" from_work_dir="MACS2_summits.bed" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (summits in BED)">
+        <data name="output_summits" format="bed" from_work_dir="MACS2_summits.bed" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (summits in BED)">
             <filter>outputs and 'summits' in outputs</filter>
         </data>
-        <data name="output_plot" format="pdf" from_work_dir="MACS2_model.pdf" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (plot)">
+        <data name="output_plot" format="pdf" from_work_dir="MACS2_model.pdf" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (plot)">
             <filter>
             ((
               outputs and 'pdf' in outputs and
@@ -279,13 +279,13 @@
             ))
             </filter>
         </data>
-        <data name="output_treat_pileup" format="bedgraph" from_work_dir="MACS2_treat_pileup.bdg" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Treatment)">
+        <data name="output_treat_pileup" format="bedgraph" from_work_dir="MACS2_treat_pileup.bdg" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Treatment)">
             <filter>outputs and 'bdg' in outputs</filter>
         </data>
-        <data name="output_control_lambda" format="bedgraph" from_work_dir="MACS2_control_lambda.bdg" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Control)">
+        <data name="output_control_lambda" format="bedgraph" from_work_dir="MACS2_control_lambda.bdg" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (Bedgraph Control)">
             <filter>outputs and 'bdg' in outputs</filter>
         </data>
-        <data name="output_extra_files" format="html" default_identifier_source="input_treatment_file" label="${tool.name} on ${on_string} (html report)">
+        <data name="output_extra_files" format="html" default_identifier_source="treatment|input_treatment_file" label="${tool.name} on ${on_string} (html report)">
             <filter>outputs and 'html' in outputs</filter>
         </data>
     </outputs>