annotate test-data/maf_stats-in2.bed @ 1:0c84cce7b030 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit 95632be9aca24769ac192f2eb6a0454af21eff9e"

chr22	17119390	17121127	XM_011546124.2_cds_1_0_chr22_17119391_r	0	-
chr22	17817310	17819129	NM_015241.3_cds_6_0_chr22_17817311_r	0	-
chr22	18846931	18848320	XM_017029167.2_cds_0_0_chr22_18846932_f	0	+
chr22	18918315	18918491	NM_016335.5_cds_3_0_chr22_18918316_r	0	-
chr22	18918315	18918491	NM_001195226.2_cds_3_0_chr22_18918316_r	0	-
chr22	21030830	21031812	NM_004173.3_cds_3_0_chr22_21030831_r	0	-
chr22	21634684	21635644	NM_001331066.1_cds_3_0_chr22_21634685_f	0	+
chr22	21634684	21635266	NM_152612.3_cds_3_0_chr22_21634685_f	0	+
chr22	22514001	22515630	NM_080740.5_cds_0_0_chr22_22514002_r	0	-
chr22	22646311	22646521	XM_005261818.2_cds_1_0_chr22_22646312_f	0	+
chr22	22646311	22646521	XM_005261815.3_cds_1_0_chr22_22646312_f	0	+
chr22	23394179	23394792	XM_017029168.1_cds_3_0_chr22_23394180_f	0	+
chr22	23394222	23394792	XM_017029169.1_cds_2_0_chr22_23394223_f	0	+
chr22	23573265	23573585	NM_001369906.1_cds_0_0_chr22_23573266_r	0	-
chr22	23573265	23573585	NM_020070.4_cds_0_0_chr22_23573266_r	0	-
chr22	26026444	26027678	XM_011530458.2_cds_43_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_017029014.1_cds_43_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_017029015.1_cds_42_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_017029016.1_cds_31_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_017029013.1_cds_43_0_chr22_26026445_f	0	+
chr22	26026444	26027678	NM_032608.7_cds_42_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_017029012.1_cds_43_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_011530465.2_cds_42_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_011530464.2_cds_43_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_011530461.2_cds_43_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_011530460.2_cds_42_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_011530459.2_cds_43_0_chr22_26026445_f	0	+
chr22	26026444	26027678	XM_017029017.1_cds_41_0_chr22_26026445_f	0	+
chr22	26026444	26027678	NM_001318245.2_cds_42_0_chr22_26026445_f	0	+
chr22	27796762	27800543	NM_002430.3_cds_1_0_chr22_27796763_r	0	-
chr22	27982220	27983851	XM_005261405.2_cds_0_0_chr22_27982221_r	0	-
chr22	27982220	27983851	NM_001145418.1_cds_0_0_chr22_27982221_r	0	-
chr22	29441541	29442122	NM_021026.2_cds_1_0_chr22_29441542_f	0	+
chr22	29488848	29490703	NM_021076.4_cds_3_0_chr22_29488849_f	0	+
chr22	31712082	31717291	NM_173566.3_cds_5_0_chr22_31712083_r	0	-
chr22	32190771	32191352	NM_001364983.1_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	XM_011529832.2_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	NM_001159545.2_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	XM_011529828.2_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	NM_001159546.2_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	NM_001364986.1_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	NM_001098527.3_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	XM_011529826.2_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	NM_001364985.1_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	NM_001364982.1_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	XM_011529827.3_cds_0_0_chr22_32190772_r	0	-
chr22	32190771	32191352	NM_001364984.1_cds_0_0_chr22_32190772_r	0	-
chr22	32358071	32358444	NM_001098535.1_cds_0_0_chr22_32358072_f	0	+
chr22	32358153	32358611	XM_017028534.1_cds_1_0_chr22_32358154_f	0	+
chr22	32358158	32358444	NM_006604.2_cds_1_0_chr22_32358159_f	0	+
chr22	35726210	35727194	NM_030642.1_cds_2_0_chr22_35726211_f	0	+