diff test-data/maf_stats-in1.bed @ 0:5a92f4c476b5 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interval2maf/ commit f7b04f8c6edca90b1e9bc867a1569996aec76d7a"
author iuc
date Thu, 13 Aug 2020 09:30:47 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/maf_stats-in1.bed	Thu Aug 13 09:30:47 2020 -0400
@@ -0,0 +1,250 @@
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+chr22	17121613	17125043	ENST00000668330.1	0	+	17121613	17121613	0	2	731,389,	0,3041,
+chr22	17137510	17165287	ENST00000155674.9	0	-	17138020	17165244	0	8	847,189,175,34,94,113,204,79,	0,1039,3548,5587,7513,10937,12031,27698,
+chr22	17137519	17159277	ENST00000336737.8	0	-	17138020	17159251	0	8	838,189,175,34,94,113,204,152,	0,1030,3539,5578,7504,10928,12022,21606,
+chr22	17137521	17143647	ENST00000477157.5	0	-	17137521	17137521	0	3	836,189,2589,	0,1028,3537,
+chr22	17137578	17159255	ENST00000399852.3	0	-	17138020	17159251	0	4	779,175,34,130,	0,3480,5519,21547,
+chr22	17137581	17141843	ENST00000486462.1	0	-	17137581	17137581	0	4	776,189,175,451,	0,968,3477,3811,
+chr22	17148447	17158986	ENST00000463033.1	0	-	17148447	17148447	0	2	113,530,	0,10009,
+chr22	17148448	17159168	ENST00000480451.1	0	-	17148448	17148448	0	3	112,204,712,	0,1093,10008,
+chr22	17159383	17165439	ENST00000329743.3	0	+	17159383	17159383	0	2	168,171,	0,5885,
+chr22	17159398	17165445	ENST00000431923.1	0	+	17159398	17159398	0	2	439,177,	0,5870,
+chr22	17178789	17219435	ENST00000399837.8	0	-	17181482	17209677	0	10	2787,203,158,109,91,128,211,220,368,80,	0,3030,3814,9549,11152,12893,24773,28281,30566,40566,
+chr22	17178789	17219585	ENST00000610390.4	0	-	17181482	17207252	0	9	2787,203,158,109,91,128,211,220,230,	0,3030,3814,9549,11152,12893,24773,28281,40566,
+chr22	17179303	17221989	ENST00000399839.5	0	-	17181482	17209677	0	10	2273,203,158,109,91,128,211,220,330,263,	0,2516,3300,9035,10638,12379,24259,27767,30052,42423,
+chr22	17179305	17199783	ENST00000330232.8	0	-	17181482	17199578	0	7	2271,203,158,109,91,128,235,	0,2514,3298,9033,10636,12377,20243,
+chr22	17179305	17209889	ENST00000262607.3	0	-	17181482	17209677	0	9	2271,203,158,109,91,128,211,220,534,	0,2514,3298,9033,10636,12377,24257,27765,30050,
+chr22	17179316	17198789	ENST00000648668.1	0	-	17179316	17179316	0	7	2260,203,158,109,91,128,191,	0,2503,3287,9022,10625,12366,19282,
+chr22	17179321	17199596	ENST00000648061.1	0	-	17188395	17199578	0	6	2255,203,158,109,128,48,	0,2498,3282,9017,12361,20227,
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+chr22	17181086	17219434	ENST00000649540.1	0	-	17181482	17209551	0	10	490,203,158,109,91,128,211,220,243,79,	0,733,1517,7252,8855,10596,22476,25984,28269,38269,
+chr22	17181382	17209504	ENST00000649915.1	0	-	17203867	17209504	0	9	194,203,158,109,1869,211,36,220,149,	0,437,1221,6956,8559,22180,22471,25688,27973,
+chr22	17182640	17188727	ENST00000469063.1	0	-	17182640	17182640	0	2	121,389,	0,5698,
+chr22	17189783	17198791	ENST00000480276.1	0	-	17189783	17189783	0	3	249,128,193,	0,1899,8815,
+chr22	17191594	17219434	ENST00000650635.1	0	-	17191594	17191594	0	5	216,211,220,243,79,	0,11968,15476,17761,27761,
+chr22	17192935	17193308	ENST00000428401.1	0	+	17192935	17192935	0	1	373,	0,
+chr22	17198856	17199595	ENST00000648343.1	0	-	17198856	17198856	0	2	423,47,	0,692,
+chr22	17207156	17219435	ENST00000543038.1	0	-	17207156	17209677	0	3	134,335,80,	0,2199,12199,
+chr22	17207205	17221854	ENST00000441548.1	0	-	17207205	17209677	0	3	85,368,128,	0,2150,14521,
+chr22	17209605	17258235	ENST00000649310.1	0	-	17209605	17209677	0	2	118,68,	0,48562,
+chr22	17209605	17258235	ENST00000649746.1	0	-	17209605	17209677	0	4	118,375,611,72,	0,12121,46662,48558,
+chr22	17213515	17214155	ENST00000344033.5	0	+	17213515	17213515	0	2	241,92,	0,548,
+chr22	17256858	17266733	ENST00000428828.1	0	-	17256858	17256858	0	3	1448,256,211,	0,3931,9664,
+chr22	17329033	17329232	ENST00000453421.1	0	+	17329033	17329033	0	1	199,	0,
+chr22	17352880	17353177	ENST00000485262.3	0	-	17352880	17352880	0	1	297,	0,
+chr22	17359948	17553332	ENST00000400585.6	0	+	17499493	17552840	0	19	75,95,184,140,105,50,170,84,154,130,38,92,127,389,129,847,1414,112,498,	0,117639,137454,139461,140682,143133,144898,151864,164169,177154,178571,178691,179044,180463,181890,182208,188202,192082,192886,
+chr22	17369365	17554145	ENST00000342247.9	0	+	17369783	17552840	0	20	544,95,184,140,105,50,170,84,210,4,130,38,92,127,389,129,847,1417,112,1311,	0,108222,128037,130044,131265,133716,135481,142447,154752,165378,167737,169154,169274,169627,171046,172473,172791,178782,182665,183469,
+chr22	17369887	17553332	ENST00000262608.12	0	+	17499493	17552840	0	19	22,95,184,140,105,50,170,84,154,130,38,92,127,389,129,847,1417,112,498,	0,107700,127515,129522,130743,133194,134959,141925,154230,167215,168632,168752,169105,170524,171951,172269,178260,182143,182947,
+chr22	17418696	17419828	ENST00000455617.1	0	+	17418696	17418696	0	1	1132,	0,
+chr22	17424387	17424775	ENST00000455251.1	0	-	17424387	17424387	0	1	388,	0,
+chr22	17428272	17499458	ENST00000497534.1	0	+	17428272	17428272	0	4	268,95,184,49,	0,49315,69130,71137,
+chr22	17477092	17558149	ENST00000612582.1	0	+	17477099	17552840	0	19	67,95,184,140,105,50,170,84,154,130,38,92,127,389,129,847,1417,112,5315,	0,495,20310,22317,23538,25989,27754,34720,47025,60010,61427,61547,61900,63319,64746,65064,71055,74938,75742,
+chr22	17518675	17519029	ENST00000437347.1	0	-	17518675	17518675	0	1	354,	0,
+chr22	17521513	17570078	ENST00000651475.1	0	-	17521513	17521513	0	6	1014,118,34,108,125,101,	0,5819,8344,21367,24413,48464,
+chr22	17548998	17554133	ENST00000355219.3	0	+	17548998	17550333	0	4	566,167,112,1299,	0,1244,3032,3836,
+chr22	17563449	17590881	ENST00000399813.1	0	+	17579944	17590236	0	10	264,220,123,56,91,119,166,155,76,787,	0,16295,17587,17908,19113,19966,23686,24475,26140,26645,
+chr22	17563463	17570256	ENST00000496051.1	0	+	17563463	17563463	0	2	250,333,	0,6460,
+chr22	17563497	17590995	ENST00000327451.11	0	+	17579944	17590236	0	11	216,63,220,123,56,91,119,166,155,76,901,	0,6426,16247,17539,17860,19065,19918,23638,24427,26092,26597,
+chr22	17563588	17582208	ENST00000467228.1	0	+	17563588	17563588	0	4	125,63,1415,851,	0,6335,16156,17769,
+chr22	17569700	17583484	ENST00000497401.1	0	+	17569700	17569700	0	6	286,220,123,56,91,69,	0,10044,11336,11657,12862,13715,
+chr22	17569706	17570393	ENST00000469889.1	0	+	17569706	17569706	0	2	90,470,	0,217,
+chr22	17580156	17589192	ENST00000443935.5	0	-	17580156	17580156	0	4	175,215,122,1326,	0,1177,2094,7710,
+chr22	17580313	17588018	ENST00000611039.1	0	-	17580313	17580313	0	4	18,215,122,152,	0,1020,4951,7553,
+chr22	17592135	17628749	ENST00000253413.10	0	-	17592673	17628635	0	9	601,88,95,69,90,67,110,66,147,	0,2393,6058,7891,8956,20676,21075,27325,36467,
+chr22	17592168	17628747	ENST00000399796.6	0	-	17592673	17628635	0	8	568,88,95,69,67,110,66,145,	0,2360,6025,7858,20643,21042,27292,36434,
+chr22	17592408	17628749	ENST00000399798.6	0	-	17592673	17628635	0	8	328,88,95,69,90,67,110,147,	0,2120,5785,7618,8683,20403,20802,36194,
+chr22	17592668	17595292	ENST00000473248.1	0	-	17592668	17592668	0	2	68,764,	0,1860,
+chr22	17594538	17628733	ENST00000413576.1	0	-	17594538	17619468	0	9	78,95,69,90,67,110,94,66,131,	0,3655,5488,6553,18273,18672,24495,24922,34064,
+chr22	17598000	17619528	ENST00000481365.5	0	-	17598000	17598000	0	6	288,69,90,67,110,68,	0,2026,3091,14811,15210,21460,
+chr22	17600679	17619528	ENST00000484653.5	0	-	17600679	17600679	0	4	502,67,110,68,	0,12132,12531,18781,
+chr22	17612613	17628748	ENST00000478963.5	0	-	17612613	17612613	0	4	265,110,66,146,	0,597,6847,15989,
+chr22	17612975	17628749	ENST00000460085.1	0	-	17612975	17612975	0	3	345,66,147,	0,6485,15627,
+chr22	17628854	17696209	ENST00000399781.5	0	+	17628854	17628854	0	5	52,599,171,108,69,	0,9247,26807,54359,67286,
+chr22	17628915	17702428	ENST00000399782.5	0	+	17655711	17702392	0	7	90,599,171,108,157,70,186,	0,9186,26746,54298,60070,67225,73327,
+chr22	17638583	17730855	ENST00000337612.9	0	+	17655711	17726690	0	5	303,171,108,144,4179,	0,17078,44630,63659,88093,
+chr22	17638583	17730855	ENST00000418951.6	0	+	17702272	17727534	0	6	303,171,108,157,144,4179,	0,17078,44630,50402,63659,88093,
+chr22	17638583	17730855	ENST00000538149.5	0	+	17655711	17726690	0	4	303,171,144,4179,	0,17078,63659,88093,
+chr22	17638583	17730855	ENST00000543133.5	0	+	17702272	17727534	0	6	303,171,108,70,144,4179,	0,17078,44630,57557,63659,88093,
+chr22	17638583	17730855	ENST00000611738.4	0	+	17638693	17727534	0	5	303,108,157,70,4179,	0,44630,50402,57557,88093,
+chr22	17638583	17730855	ENST00000616863.4	0	+	17655711	17726690	0	4	303,171,108,4179,	0,17078,44630,88093,
+chr22	17638583	17730855	ENST00000618481.4	0	+	17638693	17727534	0	6	303,108,157,70,144,4179,	0,44630,50402,57557,63659,88093,
+chr22	17638740	17728699	ENST00000498133.5	0	+	17655711	17696148	0	6	146,171,108,70,144,2023,	0,16921,44473,57400,63502,87936,
+chr22	17638756	17692395	ENST00000464649.1	0	+	17638756	17638756	0	4	130,108,157,40,	0,44457,50229,53599,
+chr22	17638756	17730855	ENST00000317582.10	0	+	17655711	17727534	0	7	130,171,108,157,70,144,4179,	0,16905,44457,50229,57384,63486,87920,
+chr22	17638771	17703733	ENST00000493680.5	0	+	17655711	17702392	0	6	115,171,108,157,70,1491,	0,16890,44442,50214,57369,63471,
+chr22	17638810	17730622	ENST00000355028.4	0	+	17655711	17726806	0	5	76,171,108,157,3946,	0,16851,44403,50175,87866,
+chr22	17689073	17729140	ENST00000399777.1	0	+	17689073	17702288	0	3	69,144,2464,	0,13169,37603,
+chr22	17695737	17702363	ENST00000479296.1	0	+	17695737	17695737	0	2	473,121,	0,6505,
+chr22	17706709	17727670	ENST00000485631.1	0	+	17706709	17706709	0	2	116,994,	0,19967,
+chr22	17734137	17774016	ENST00000317361.11	0	-	17735579	17773689	0	6	1454,213,140,211,70,407,	0,3879,5211,9665,15967,39472,
+chr22	17734141	17774042	ENST00000615414.4	0	-	17735579	17739423	0	4	1450,213,140,433,	0,3875,5207,39468,
+chr22	17734141	17774495	ENST00000399767.5	0	-	17735579	17739423	0	5	1450,213,140,211,115,	0,3875,5207,9661,40239,
+chr22	17734141	17774495	ENST00000614949.4	0	-	17735579	17739423	0	5	1450,213,140,70,115,	0,3875,5207,15963,40239,
+chr22	17734141	17774495	ENST00000622694.4	0	-	17735579	17750116	0	6	1450,213,140,211,70,115,	0,3875,5207,9661,15963,40239,
+chr22	17734170	17774492	ENST00000399774.7	0	-	17735579	17750116	0	6	1421,213,140,211,70,112,	0,3846,5178,9632,15934,40210,
+chr22	17734174	17774489	ENST00000399765.5	0	-	17735579	17739423	0	4	1417,213,140,109,	0,3842,5174,40206,
+chr22	17735221	17741194	ENST00000494097.5	0	-	17735221	17735221	0	3	370,213,1846,	0,2795,4127,
+chr22	17735498	17774412	ENST00000342111.9	0	-	17739392	17750116	0	7	93,213,140,95,211,70,32,	0,2518,3850,4583,8304,14606,38882,
+chr22	17735551	17774412	ENST00000550946.5	0	-	17735551	17735551	0	6	40,213,828,211,70,32,	0,2465,3797,8251,14553,38829,
+chr22	17735551	17774665	ENST00000551952.5	0	-	17735579	17750116	0	6	40,213,140,211,70,26,	0,2465,3797,8251,14553,39088,
+chr22	17735551	17774665	ENST00000611040.1	0	-	17735579	17739423	0	4	40,213,140,26,	0,2465,3797,39088,
+chr22	17738057	17774495	ENST00000473439.5	0	-	17738057	17738057	0	4	172,140,211,115,	0,1291,5745,36323,
+chr22	17739447	17774770	ENST00000552886.1	0	-	17739447	17739447	0	3	41,211,78,	0,4355,35245,
+chr22	17740030	17774495	ENST00000617586.1	0	-	17740030	17750116	0	4	146,211,70,115,	0,3772,10074,34350,
+chr22	17764179	17764259	ENST00000583102.1	0	-	17764179	17764179	0	1	80,	0,
+chr22	17777321	17779481	ENST00000600723.1	0	+	17777321	17777321	0	1	2160,	0,
+chr22	17787648	18024561	ENST00000441493.7	0	-	17790731	17906812	0	32	3268,74,100,94,111,95,1819,83,141,114,138,254,196,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,338,281,	0,3349,3553,21195,23054,29041,29662,33778,34381,35298,39995,44205,54173,77250,78275,84188,98229,99521,99674,101385,103836,106159,107635,108597,109075,111799,113193,114229,114982,116983,118900,236632,
+chr22	17787648	18024561	ENST00000672019.1	0	-	17830068	17906812	0	33	3268,74,100,94,111,95,1819,83,141,114,138,88,254,196,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,338,281,	0,3349,3553,21195,23054,29041,29662,33778,34381,35298,39995,42418,44205,54173,77250,78275,84188,98229,99521,99674,101385,103836,106159,107635,108597,109075,111799,113193,114229,114982,116983,118900,236632,
+chr22	17787651	17811497	ENST00000476405.1	0	-	17787651	17787651	0	5	3265,74,100,94,795,	0,3346,3550,21192,23051,
+chr22	17790539	17791667	ENST00000252134.11	0	-	17790539	17790539	0	3	377,74,466,	0,458,662,
+chr22	17790836	17815669	ENST00000580469.1	0	-	17790836	17790836	0	6	80,74,100,94,111,3163,	0,161,365,18007,19866,21670,
+chr22	17790945	17817489	ENST00000577821.5	0	-	17790945	17817489	0	8	126,100,51,94,111,51,95,179,	0,256,12865,17898,19757,21561,25744,26365,
+chr22	17791263	17817425	ENST00000579997.5	0	-	17791263	17817425	0	6	38,66,94,111,95,115,	0,2465,17580,19439,25426,26047,
+chr22	17800721	17802035	ENST00000657505.1	0	+	17800721	17800721	0	2	415,576,	0,738,
+chr22	17803553	17810736	ENST00000584751.1	0	-	17803571	17810736	0	3	308,94,34,	0,5290,7149,
+chr22	17819021	17832000	ENST00000498573.5	0	-	17819021	17832000	0	5	108,83,141,114,147,	0,2405,3008,3925,12832,
+chr22	17819035	17831927	ENST00000578984.1	0	-	17819035	17831927	0	6	94,83,141,114,63,74,	0,2391,2994,3911,7418,12818,
+chr22	17834327	17906835	ENST00000400561.6	0	-	17834449	17906812	0	20	222,196,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,287,	0,7494,30571,31596,37509,51550,52842,52995,54706,57157,59480,60956,61918,62396,65120,66514,67550,68303,70304,72221,
+chr22	17839591	18001501	ENST00000495076.5	0	-	17896820	17906812	0	19	2426,88,89,187,174,63,113,197,148,97,127,116,258,156,102,117,208,338,109,	0,25307,26332,32245,46286,47578,47731,49442,51893,54216,55692,56654,57132,61250,62286,63039,65040,66957,161801,
+chr22	17839950	17842482	ENST00000578905.1	0	-	17839950	17839950	0	1	2532,	0,
+chr22	17839950	17906812	ENST00000414725.6	0	-	17841775	17906812	0	20	2067,88,89,187,84,174,63,113,197,148,97,127,116,258,101,156,102,117,208,264,	0,24948,25973,31886,44324,45927,47219,47372,49083,51534,53857,55333,56295,56773,59497,60891,61927,62680,64681,66598,
+chr22	17841674	17906827	ENST00000383094.7	0	-	17841775	17906812	0	19	343,88,89,187,174,63,113,197,148,97,127,116,258,101,156,102,117,208,279,	0,23224,24249,30162,44203,45495,45648,47359,49810,52133,53609,54571,55049,57773,59167,60203,60956,62957,64874,
+chr22	17860162	17895288	ENST00000461307.5	0	-	17864653	17895288	0	11	4824,89,187,84,174,63,113,197,148,97,5,	0,5761,11674,24112,25715,27007,27160,28871,31322,33645,35121,
+chr22	17864614	17906874	ENST00000585038.1	0	-	17864653	17906812	0	22	372,89,187,108,108,57,99,174,63,113,197,148,97,127,116,258,101,156,102,117,208,326,	0,1309,7222,8132,10832,14731,16590,21263,22555,22708,24419,26870,29193,30669,31631,32109,34833,36227,37263,38016,40017,41934,
+chr22	17865923	17876703	ENST00000462645.1	0	-	17865923	17865923	0	3	89,187,296,	0,5913,10484,
+chr22	17871929	17876872	ENST00000465886.1	0	-	17871929	17871929	0	2	94,465,	0,4478,
+chr22	17871933	17876739	ENST00000498345.1	0	-	17871933	17871933	0	3	90,116,332,	0,3277,4474,