Mercurial > repos > iuc > mageck_pathway
diff test-data/out.count.txt @ 2:ff3716b505d3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 49e456dda49db1f52fc876f406a10273a408b1a2
author | iuc |
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date | Wed, 04 Apr 2018 11:02:50 -0400 |
parents | |
children | 0f3a0638a24e |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out.count.txt Wed Apr 04 11:02:50 2018 -0400 @@ -0,0 +1,2551 @@ +sgRNA Gene test1_fastq_gz +s_47512 RNF111 1 +s_24835 HCFC1R1 1 +s_14784 CYP4B1 4 +s_51146 SLC18A1 1 +s_58960 TRIM5 1 +s_48256 RPRD2 1 +s_30297 KRTAP5-5 1 +s_14555 CYB5B 1 +s_39959 PAAF1 1 +s_45293 PUF60 1 +s_49358 SCN8A 1 +s_64995 ZYG11A 1 +s_4029 ASTE1 1 +s_45554 R3HDML 1 +s_34264 MMRN1 1 +s_37459 NOL6 1 +s_23990 GPX7 1 +s_20268 FANCC 1 +s_14157 CTLA4 1 +s_36773 NEURL4 18 +s_18804 ETFB 1 +s_782 ACSS1 1 +s_18272 ENPP2 1 +s_46620 RCN1 1 +s_55436 TAS2R3 1 +s_57947 TMPRSS2 1 +s_6438 C14orf159 1 +s_33846 MGST2 1 +s_16328 DNAH6 1 +s_17875 EIF4G1 1 +s_2305 ANAPC11 1 +s_2500 ANKRD2 1 +s_82 AARSD1 1 +s_55329 TAL1 1 +s_57926 TMPRSS11E 8 +s_38414 NUP98 4 +s_50044 SERPINF1 1 +s_9257 CASR 1 +s_63396 ZNF182 1 +s_56478 THBS3 1 +s_17191 DYRK1A 1 +s_11988 CIR1 1 +s_43313 PPARD 1 +s_44681 PSMA4 1 +s_10387 CD320 1 +s_64869 ZPBP 1 +s_54385 STK17B 1 +s_25423 HIST1H4D 1 +s_54172 ST8SIA4 9 +s_1161 ADCY10 1 +s_29184 KIAA0913 1 +s_42977 POLD3 1 +s_49449 SCUBE1 1 +s_24181 GRM4 1 +s_52507 SMARCA5 1 +s_28674 KCNJ10 1 +s_61074 VAMP2 4 +s_3954 ASIC2 1 +s_2385 ANK1 1 +s_18397 EPDR1 1 +s_18377 EPB41L4B 1 +s_34580 MRAP2 1 +s_48676 RUFY3 10 +s_691 ACP1 1 +s_30460 LAMP2 1 +s_42637 PLRG1 1 +s_12695 CNOT6 1 +s_33316 MECOM 2 +s_35081 MSRB2 1 +s_58512 TPD52L2 1 +s_19912 FAM22F 1 +s_45517 QSOX2 1 +s_56705 TINAG 1 +s_10946 CDKL5 1 +s_57473 TMEM211 2 +s_57657 TMEM44 1 +s_43200 POT1 1 +s_19436 FAM135A 1 +s_184 ABCB9 1 +s_30171 KRT84 1 +s_44758 PSMC3IP 1 +s_48313 RPS3 1 +s_58142 TNFSF12 6 +s_59718 TTLL6 7 +s_9725 CCDC43 1 +s_5135 BCKDHA 1 +s_36539 NDUFC2 1 +s_27251 IL27RA 1 +s_48939 SAMD10 1 +s_27343 IL5RA 1 +s_28386 KANK2 1 +s_27610 INSRR 1 +s_2769 AOC3 2 +s_58632 TRA2B 12 +s_6674 C16orf86 1 +s_22902 GJD4 1 +s_48278 RPS15A 1 +s_61998 WIPF2 1 +s_4937 BAIAP3 2 +s_54471 STOML1 2 +s_19157 FABP12 1 +s_5434 BIN1 2 +s_42042 PIP5K1A 1 +s_7794 C3orf18 1 +s_54846 SVIL 1 +s_62273 XPA 1 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ZNF384 1 +s_16339 DNAH9 1 +s_55936 TCTEX1D1 1 +s_14497 CXorf40A 1 +s_1123 ADAT1 1 +s_41304 PERP 1 +s_18719 ESAM 1 +s_35118 MSX2 1 +s_30128 KRT6A 1 +s_402 ABTB1 1 +s_32578 MAP1LC3A 1 +s_45063 PTMA 1 +s_43551 PPP1R14D 1 +s_2538 ANKRD32 1 +s_40384 PAX1 1 +s_29076 KIAA0101 1 +s_40482 PCDH10 1 +s_2348 ANGPT2 1 +s_59756 TTYH3 1 +s_34330 MOB4 1 +s_49331 SCN2B 1 +s_54905 SYDE1 1 +s_39101 OR2T1 1 +s_36623 NEDD4L 1 +s_40500 PCDH15 2 +s_10660 CDC42SE2 1 +s_30867 LGALS13 1 +s_24322 GSTK1 2 +s_59167 TRPC1 1 +s_57440 TMEM201 1 +s_50539 SHC1 1 +s_37087 NIT1 1 +s_56345 TGFB2 1 +s_55388 TARM1 1 +s_1224 ADD2 1 +s_5256 BCOR 2 +s_51731 SLC35B3 1 +s_12987 COL6A6 1 +s_56745 TJP3 1 +s_19340 FAM120AOS 1 +s_53904 SRPR 1 +s_1588 AGXT 1 +s_46157 RASA3 1 +s_19166 FABP3 7 +s_22330 GATM 1 +s_10731 CDH13 1 +s_2329 ANAPC5 1 +s_46045 RANGAP1 1 +s_54814 SUV39H2 1 +s_56169 TEX14 1 +s_3433 ARHGEF26 1 +s_48032 RP4-811H24.6 1 +s_51930 SLC41A3 1 +s_63893 ZNF433 1 +s_46996 RGCC 1 +s_13863 CSF3R 1 +s_26337 HSPH1 1 +s_12983 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ZNF184 1 +s_18679 ERMP1 1 +s_9161 CASC1 2 +s_45196 PTPRF 1 +s_23002 GLIS2 1 +s_17310 EBP 1 +s_54797 SUSD3 1 +s_1528 AGPAT4 1 +s_7045 C1QTNF6 1 +s_22952 GLCE 1 +s_7105 C1orf111 1 +s_36537 NDUFC1 1 +s_15359 DDX11 1 +s_32881 MARK3 1 +s_27486 INHA 1 +s_2399 ANK2 1 +s_60825 USP10 1 +s_20838 FEZ2 1 +s_43974 PREB 1 +s_16482 DNAJC5G 1 +s_26334 HSPG2 1 +s_46175 RASD1 1 +s_26764 IFT20 1 +s_14739 CYP2J2 1 +s_11386 CERS2 1 +s_5964 BTN1A1 1 +s_16810 DPYSL3 1 +s_16136 DLGAP2 1 +s_13401 CPPED1 1 +s_22359 GBGT1 1 +s_49575 SDSL 1 +s_62067 WNT16 1 +s_61863 WDR83OS 1 +s_44742 PSMB8 2 +s_31855 LRRFIP2 1 +s_528 ACADM 1 +s_13073 COPA 1 +s_32741 MAPK3 1 +s_38779 OPA3 1 +s_34827 MRPS17 1 +s_16969 DTX1 1 +s_56448 THAP4 1 +s_906 ACVR2A 1 +s_45078 PTP4A2 1 +s_23628 GPR101 1 +s_58510 TPD52L1 1 +s_561 ACAT2 1 +s_52492 SMAP2 1 +s_24039 GRB2 1 +s_46264 RASSF4 1 +s_39609 ORMDL3 1 +s_47343 RIMS4 1 +s_56575 THUMPD1 1 +s_3261 ARHGAP18 1 +s_8148 C6orf165 1 +s_17030 DUSP10 1 +s_56155 TEX101 1 +s_21191 FLI1 1 +s_50732 SIK1 1 +s_2914 APCDD1 1 +s_30717 LDB3 1 +s_4702 AXIN1 2 +s_21360 FNIP2 1 +s_54350 STEAP4 1 +s_57227 TMEM14A 2 +s_58177 TNIK 1 +s_7465 C20orf26 2 +s_17327 ECE2 1 +s_51639 SLC30A10 1 +s_4352 ATP5A1 1 +s_18616 ERCC8 1 +s_44043 PRIMA1 1 +s_36712 NELL2 1 +s_61348 VPS16 1 +s_2680 ANO4 1 +s_30437 LAMB2 1 +s_33742 MFSD12 1 +s_58796 TRHR 1 +s_52365 SLCO5A1 1 +s_41281 PEMT 1 +s_23427 GON4L 1 +s_13427 CPSF3L 1 +s_40193 PAPD7 1 +s_21543 FPGT 2 +s_16722 DPH2 1 +s_40078 PAIP2B 1 +s_60284 UBL5 1 +s_59936 TXNDC15 1 +s_31898 LRRTM4 1 +s_44833 PSMG1 2 +s_19552 FAM166B 1 +s_19478 FAM151A 1 +s_30185 KRTAP1-3 1 +s_61742 WDR45 1 +s_7252 C1orf212 1 +s_29507 KIF9 1 +s_2786 AP1G1 1 +s_21222 FLT1 1 +s_38408 NUP93 1 +s_60875 USP25 1 +s_39905 P2RX5 1 +s_54470 STOML1 1 +s_19064 EYA4 1 +s_41060 PDGFRL 1 +s_32049 LUC7L 1 +s_11837 CHRNA9 1 +s_64166 ZNF563 1 +s_11211 CENPK 1 +s_63097 ZFYVE21 1 +s_24757 HAUS4 1 +s_4190 ATG7 1 +s_48629 RTN4 1 +s_22880 GJB3 1 +s_44427 PRR7 1 +s_464 AC069154.2 1 +s_22093 GALC 1 +s_55367 TAPBP 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AIF1L 0 +s_16675 DOPEY1 0 +s_16745 DPP10 0 +s_16798 DPYD 0 +s_16866 DRGX 0 +s_16867 DRGX 0 +s_1687 AIM1 0 +s_16878 DSC1 0 +s_16993 DUOX1 0 +s_17119 DUT 0 +s_17168 DYNC2LI1 0 +s_17195 DYRK1B 0 +s_17214 DYX1C1 0 +s_17224 DZIP1L 0 +s_17229 E2F1 0 +s_17374 ECT2 0 +s_17432 EDN2 0 +s_17440 EDNRA 0 +s_17442 EDNRB 0 +s_17459 EEF1D 0 +s_1766 AKAP14 0 +s_17709 EHMT2 0 +s_17762 EIF2B4 0 +s_1779 AKAP4 0 +s_17811 EIF3E 0 +s_17901 EIF5A2 0 +s_17942 ELF1 0 +s_17959 ELF5 0 +s_18018 ELOF1 0 +s_18106 EMCN 0 +s_18119 EMID1 0 +s_18125 EMILIN1 0 +s_18145 EML2 0 +s_18170 EMR1 0 +s_18171 EMR1 0 +s_18273 ENPP3 0 +s_1834 AKR1B10 0 +s_18362 EPB41L1 0 +s_18365 EPB41L1 0 +s_18409 EPHA10 0 +s_18423 EPHA4 0 +s_18445 EPHA8 0 +s_18531 EPS8L3 0 +s_18567 ERBB2IP 0 +s_18600 ERCC4 0 +s_18710 ERRFI1 0 +s_18739 ESM1 0 +s_18757 ESR2 0 +s_18767 ESRRA 0 +s_18772 ESRRB 0 +s_18782 ESYT1 0 +s_18809 ETHE1 0 +s_18849 ETV3 0 +s_18865 ETV4 0 +s_18908 EVL 0 +s_18920 EVX2 0 +s_18965 EXOC3L4 0 +s_19006 EXOSC3 0 +s_19048 EXTL2 0 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LRP8 0 +s_316 ABHD2 0 +s_31657 LRRC25 0 +s_3173 ARAP2 0 +s_31733 LRRC42 0 +s_31805 LRRC71 0 +s_31854 LRRFIP2 0 +s_32 AADACL2 0 +s_32012 LTBP1 0 +s_32024 LTBP3 0 +s_32073 LUZP1 0 +s_32131 LY75-CD302 0 +s_32160 LYL1 0 +s_32271 LZIC 0 +s_32315 MACROD2 0 +s_32407 MAGEC3 0 +s_32418 MAGEE2 0 +s_32434 MAGI3 0 +s_32474 MAMDC4 0 +s_32504 MAN1A2 0 +s_32521 MAN2B1 0 +s_32555 MANSC1 0 +s_32594 MAP2 0 +s_32656 MAP3K7 0 +s_32657 MAP3K7 0 +s_32687 MAP6 0 +s_32689 MAP6 0 +s_32700 MAP7 0 +s_32773 MAPKAP1 0 +s_32837 4-Mar 0 +s_32844 6-Mar 0 +s_32962 MATN3 0 +s_3297 ARHGAP26 0 +s_33017 MBD4 0 +s_3312 ARHGAP30 0 +s_33131 MCF2 0 +s_3317 ARHGAP30 0 +s_33192 MCM9 0 +s_33218 MCRS1 0 +s_33319 MECP2 0 +s_33476 MEIS2 0 +s_33561 METTL1 0 +s_33565 METTL11B 0 +s_33625 METTL23 0 +s_33723 MFNG 0 +s_33750 MFSD2B 0 +s_338 ABI1 0 +s_33812 MGAT4B 0 +s_33844 MGST1 0 +s_33885 MICAL3 0 +s_33958 MINA 0 +s_34151 MLXIPL 0 +s_34213 MMP2 0 +s_34226 MMP24 0 +s_34294 MNT 0 +s_34310 MOB1B 0 +s_3432 ARHGEF26 0 +s_3437 ARHGEF3 0 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PISD 0 +s_42081 PITPNC1 0 +s_4209 ATL2 0 +s_42107 PITX3 0 +s_42123 PJA1 0 +s_42148 PKD2L2 0 +s_42162 PKHD1L1 0 +s_42181 PKM 0 +s_42215 PKP3 0 +s_4224 ATN1 0 +s_42243 PLA2G16 0 +s_42261 PLA2G2E 0 +s_42292 PLA2G5 0 +s_42305 PLA2R1 0 +s_42321 PLAC8L1 0 +s_42351 PLB1 0 +s_42366 PLCB2 0 +s_42392 PLCH1 0 +s_42446 PLEC 0 +s_42467 PLEKHA5 0 +s_42519 PLEKHG6 0 +s_42536 PLEKHM1 0 +s_42544 PLEKHM3 0 +s_42554 PLEKHO1 0 +s_42560 PLEKHS1 0 +s_42616 PLOD1 0 +s_42663 PLSCR5 0 +s_42751 PML 0 +s_42792 PNCK 0 +s_42839 PNN 0 +s_42932 PODXL2 0 +s_43016 POLK 0 +s_43060 POLR2C 0 +s_43122 POLR3G 0 +s_43155 POMT1 0 +s_43158 POMT1 0 +s_43253 POU6F2 0 +s_43302 PPAPDC1B 0 +s_43354 PPFIA1 0 +s_4339 ATP2C1 0 +s_43430 PPIL4 0 +s_43445 PPM1A 0 +s_43527 PPP1R12B 0 +s_43533 PPP1R13B 0 +s_43542 PPP1R14A 0 +s_43623 PPP1R3F 0 +s_43629 PPP1R42 0 +s_43789 PQLC2 0 +s_43834 PRAMEF13 0 +s_43837 PRAMEF16 0 +s_43862 PRB4 0 +s_4406 ATP5S 0 +s_44065 PRKACB 0 +s_44075 PRKAG2 0 +s_44091 PRKAR1B 0 +s_441 AC013461.1 0 +s_44162 PRKRA 0 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0 +s_49570 SDR9C7 0 +s_49599 SEC14L2 0 +s_49625 SEC22A 0 +s_49651 SEC24D 0 +s_49668 SEC61A2 0 +s_49706 SELE 0 +s_4972 BARHL2 0 +s_49775 SEMA4F 0 +s_49799 SEMA6D 0 +s_49844 SEPP1 0 +s_49859 12-Sep 0 +s_49881 5-Sep 0 +s_49934 SERINC5 0 +s_49957 SERPINA3 0 +s_50004 SERPINB5 0 +s_5001 BAX 0 +s_5006 BAZ1A 0 +s_50112 SETD3 0 +s_50123 SETD6 0 +s_50127 SETD7 0 +s_50162 SEZ6L2 0 +s_5022 BAZ2B 0 +s_5026 BBC3 0 +s_50280 SGCA 0 +s_50284 SGCB 0 +s_50342 SGPP2 0 +s_50388 SH2D3C 0 +s_50391 SH2D3C 0 +s_50491 SH3KBP1 0 +s_505 ACACB 0 +s_50517 SH3TC2 0 +s_5056 BBS4 0 +s_50560 SHE 0 +s_50596 SHISA6 0 +s_50652 SI 0 +s_50684 SIGLEC1 0 +s_50692 SIGLEC10 0 +s_50693 SIGLEC11 0 +s_50722 SIGLEC9 0 +s_50761 SIPA1 0 +s_50779 SIRPB1 0 +s_50780 SIRPB1 0 +s_51043 SLC15A1 0 +s_51096 SLC16A5 0 +s_51179 SLC1A2 0 +s_51276 SLC22A5 0 +s_51312 SLC24A4 0 +s_51344 SLC25A13 0 +s_51482 SLC25A5 0 +s_51528 SLC26A9 0 +s_51555 SLC28A1 0 +s_51613 SLC2A6 0 +s_51660 SLC30A6 0 +s_51715 SLC35A4 0 +s_51729 SLC35B3 0 +s_51774 SLC35F3 0 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TMEM107 0 +s_57150 TMEM127 0 +s_57173 TMEM132B 0 +s_57181 TMEM132E 0 +s_57189 TMEM134 0 +s_57288 TMEM164 0 +s_57299 TMEM167B 0 +s_57409 TMEM194A 0 +s_57422 TMEM198 0 +s_57429 TMEM2 0 +s_57475 TMEM212 0 +s_57531 TMEM231 0 +s_57568 TMEM245 0 +s_57700 TMEM54 0 +s_57873 TMF1 0 +s_57992 TMUB1 0 +s_58180 TNIP1 0 +s_58211 TNKS2 0 +s_58237 TNNT1 0 +s_58256 TNPO2 0 +s_58259 TNPO3 0 +s_58309 TOM1 0 +s_58485 TP73 0 +s_58503 TPD52 0 +s_58533 TPI1 0 +s_5857 BSPRY 0 +s_58612 TPSG1 0 +s_58633 TRA2B 0 +s_58655 TRAF3 0 +s_58668 TRAF3IP2 0 +s_58690 TRAK1 0 +s_58809 TRIB2 0 +s_58962 TRIM50 0 +s_58968 TRIM52 0 +s_59050 TRIO 0 +s_59107 TRMT1L 0 +s_59133 TRMT61B 0 +s_59160 TROVE2 0 +s_59173 TRPC4 0 +s_59196 TRPM1 0 +s_59204 TRPM3 0 +s_59311 TSEN54 0 +s_59332 TSHB 0 +s_59340 TSHZ2 0 +s_59360 TSNARE1 0 +s_5952 BTG4 0 +s_59539 TTC21A 0 +s_59602 TTC39A 0 +s_59654 TTC9C 0 +s_59717 TTLL6 0 +s_5974 BTN3A1 0 +s_59748 TTYH1 0 +s_59807 TUBB2B 0 +s_59859 TULP1 0 +s_59870 TULP3 0 +s_59955 TXNDC8 0 +s_59983 TXNRD2 0 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ADAM18 0 +s_9646 CCDC170 0 +s_9710 CCDC40 0 +s_9732 CCDC48 0 +s_976 ADAM21 0 +s_9763 CCDC62 0 +s_9868 CCDC89 0 +s_991 ADAM30 0 +s_9925 CCL1 0 +s_9973 CCL26 0