Mercurial > repos > iuc > maker
comparison maker.xml @ 3:96ac930d84fa draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit df4df9980131dcfb7b77de9e625407926fb4d016
author | iuc |
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date | Mon, 06 May 2019 10:06:04 -0400 |
parents | d3a2072d8745 |
children | 5e96efe6e6c6 |
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2:d3a2072d8745 | 3:96ac930d84fa |
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33 tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null && | 33 tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null && |
34 | 34 |
35 export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && | 35 export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && |
36 #end if | 36 #end if |
37 | 37 |
38 mpiexec -n \${GALAXY_SLOTS:-4} maker maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null | 38 mpiexec -n \${GALAXY_SLOTS:-4} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null |
39 | 39 |
40 && | 40 && |
41 | 41 |
42 gff3_merge -d *.maker.output/*_master_datastore_index.log -o '${output_full}' | 42 gff3_merge -d *.maker.output/*_master_datastore_index.log -o '${output_full}' |
43 | 43 |