comparison maker.xml @ 6:d46d803ca6cc draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 6ba137e32243a6de1fb83a7d4b88f9283db5dd01"

5:5201ec38c01f

            tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null &&

            export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
        #end if

        MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}" &&
        if [ "\$MAKER_NO_MPI" != "1" ]; then
            MPI_CMD="";
        fi &&

        \${MPI_CMD} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null

        &&

6:d46d803ca6cc

            tar -C 'augustus_dir/species/' -xzvf '${abinitio_gene_prediction.aug_prediction.augustus_model}' > /dev/null &&

            export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ &&
        #end if

        MPI_CMD="" &&
        if [ "\$MAKER_MPI" == "1" ]; then
            MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}";
        fi &&

        \${MPI_CMD} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null

        &&