Mercurial > repos > iuc > maker
comparison maker.xml @ 10:370c210d9541 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit f16ca4a49497ad29bbbd537eb80f5cf48eba7217
| author | iuc |
|---|---|
| date | Thu, 04 Aug 2022 06:35:56 +0000 |
| parents | a444254e9a57 |
| children |
comparison
equal
deleted
inserted
replaced
| 9:a444254e9a57 | 10:370c210d9541 |
|---|---|
| 229 keep_preds=${advanced.keep_preds} # Concordance threshold to add unsupported gene prediction (bound by 0 and 1) | 229 keep_preds=${advanced.keep_preds} # Concordance threshold to add unsupported gene prediction (bound by 0 and 1) |
| 230 | 230 |
| 231 split_hit=${advanced.split_hit} # length for the splitting of hits (expected max intron size for evidence alignments) | 231 split_hit=${advanced.split_hit} # length for the splitting of hits (expected max intron size for evidence alignments) |
| 232 single_exon=${advanced.single_exon.single_exon} # consider single exon EST evidence when generating annotations, 1 = yes, 0 = no | 232 single_exon=${advanced.single_exon.single_exon} # consider single exon EST evidence when generating annotations, 1 = yes, 0 = no |
| 233 #if $advanced.single_exon.single_exon == '1' | 233 #if $advanced.single_exon.single_exon == '1' |
| 234 single_length=${advanced.single_length} # min length required for single exon ESTs if 'single_exon is enabled' | 234 single_length=${advanced.single_exon.single_length} # min length required for single exon ESTs if 'single_exon is enabled' |
| 235 #else | 235 #else |
| 236 single_length=250 # min length required for single exon ESTs if 'single_exon is enabled' | 236 single_length=250 # min length required for single exon ESTs if 'single_exon is enabled' |
| 237 #end if | 237 #end if |
| 238 correct_est_fusion=${advanced.correct_est_fusion} # limits use of ESTs in annotation to avoid fusion genes | 238 correct_est_fusion=${advanced.correct_est_fusion} # limits use of ESTs in annotation to avoid fusion genes |
| 239 | 239 |