Mercurial > repos > iuc > maker
diff test-data/evidences_reuse.gff3 @ 0:16e44ec438c4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 2896dcfd180800d00ea413a59264ef8b11788b8e
| author | iuc |
|---|---|
| date | Thu, 19 Oct 2017 15:58:39 -0400 |
| parents | |
| children | 73a79dec987b |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/evidences_reuse.gff3 Thu Oct 19 15:58:39 2017 -0400 @@ -0,0 +1,62 @@ +##gff-version 3 +HS08198 . contig 1 2344 . . . ID=HS08198;Name=HS08198 +### +HS08198 repeatmasker match 578 651 13 + . ID=HS08198:hit:10:1.3.0.0;Name=species:%28AGAAGGT%29n|genus:Simple_repeat;Target=species:%28AGAAGGT%29n|genus:Simple_repeat 1 75 + +HS08198 repeatmasker match_part 578 651 13 + . ID=HS08198:hsp:27:1.3.0.0;Parent=HS08198:hit:10:1.3.0.0;Target=species:%2528AGAAGGT%2529n|genus:Simple_repeat 1 75 + +### +HS08198 blastn expressed_sequence_match 444 1848 140 + . ID=HS08198:hit:11:3.12.0.0;Name=HS08198.g2;score=140 +HS08198 blastn match_part 444 583 140 + . ID=HS08198:hsp:28:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 79 218 +;Gap=M140 +HS08198 blastn match_part 445 523 79 + . ID=HS08198:hsp:29:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 1 79 +;Gap=M79 +HS08198 blastn match_part 808 895 88 + . ID=HS08198:hsp:30:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 214 301 +;Gap=M88 +HS08198 blastn match_part 1053 1123 71 + . ID=HS08198:hsp:31:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 301 371 +;Gap=M71 +HS08198 blastn match_part 1206 1315 110 + . ID=HS08198:hsp:32:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 370 479 +;Gap=M110 +HS08198 blastn match_part 1586 1689 104 + . ID=HS08198:hsp:33:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 479 582 +;Gap=M104 +HS08198 blastn match_part 1771 1848 78 + . ID=HS08198:hsp:34:3.12.0.0;Parent=HS08198:hit:11:3.12.0.0;Target=HS08198.g2 581 658 +;Gap=M78 +HS08198 est2genome expressed_sequence_match 352 1848 2869 + . ID=HS08198:hit:12:3.12.0.0;Name=HS08198.g2;score=2869 +HS08198 est2genome match_part 352 397 2869 + . ID=HS08198:hsp:35:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 3 52 +;Gap=M46 +HS08198 est2genome match_part 421 582 2869 + . ID=HS08198:hsp:36:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 53 217 +;Gap=M162 +HS08198 est2genome match_part 812 894 2869 + . ID=HS08198:hsp:37:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 218 300 +;Gap=M83 +HS08198 est2genome match_part 1053 1123 2869 + . ID=HS08198:hsp:38:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 301 371 +;Gap=M71 +HS08198 est2genome match_part 1208 1315 2869 + . ID=HS08198:hsp:39:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 372 479 +;Gap=M108 +HS08198 est2genome match_part 1587 1688 2869 + . ID=HS08198:hsp:40:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 480 581 +;Gap=M102 +HS08198 est2genome match_part 1772 1848 2869 + . ID=HS08198:hsp:41:3.12.0.0;Parent=HS08198:hit:12:3.12.0.0;Target=HS08198.g2 582 658 +;Gap=M77 +HS04636 . contig 1 9453 . . . ID=HS04636;Name=HS04636 +### +HS04636 repeatmasker match 3852 3888 12 + . ID=HS04636:hit:0:1.3.0.0;Name=species:%28TTGTAAT%29n|genus:Simple_repeat;Target=species:%28TTGTAAT%29n|genus:Simple_repeat 1 37 + +HS04636 repeatmasker match_part 3852 3888 12 + . ID=HS04636:hsp:0:1.3.0.0;Parent=HS04636:hit:0:1.3.0.0;Target=species:%2528TTGTAAT%2529n|genus:Simple_repeat 1 37 + +HS04636 repeatmasker match 6028 6072 21 + . ID=HS04636:hit:1:1.3.0.0;Name=species:%28TTGT%29n|genus:Simple_repeat;Target=species:%28TTGT%29n|genus:Simple_repeat 1 46 + +HS04636 repeatmasker match_part 6028 6072 21 + . ID=HS04636:hsp:1:1.3.0.0;Parent=HS04636:hit:1:1.3.0.0;Target=species:%2528TTGT%2529n|genus:Simple_repeat 1 46 + +HS04636 repeatmasker match 3840 3847 17 + . ID=HS04636:hit:2:1.3.0.0;Name=species:%28ATAC%29n|genus:Simple_repeat;Target=species:%28ATAC%29n|genus:Simple_repeat 3 57 + +HS04636 repeatmasker match_part 3840 3847 17 + . ID=HS04636:hsp:2:1.3.0.0;Parent=HS04636:hit:2:1.3.0.0;Target=species:%2528ATAC%2529n|genus:Simple_repeat 3 57 + +HS04636 repeatmasker match 3791 3839 22 + . ID=HS04636:hit:3:1.3.0.0;Name=species:%28AC%29n|genus:Simple_repeat;Target=species:%28AC%29n|genus:Simple_repeat 1 49 + +HS04636 repeatmasker match_part 3791 3839 22 + . ID=HS04636:hsp:3:1.3.0.0;Parent=HS04636:hit:3:1.3.0.0;Target=species:%2528AC%2529n|genus:Simple_repeat 1 49 + +HS04636 repeatmasker match 9419 9435 16 + . ID=HS04636:hit:4:1.3.0.0;Name=species:%28A%29n|genus:Simple_repeat;Target=species:%28A%29n|genus:Simple_repeat 1 17 + +HS04636 repeatmasker match_part 9419 9435 16 + . ID=HS04636:hsp:4:1.3.0.0;Parent=HS04636:hit:4:1.3.0.0;Target=species:%2528A%2529n|genus:Simple_repeat 1 17 + +HS04636 repeatmasker match 939 980 13 + . ID=HS04636:hit:5:1.3.0.0;Name=species:%28CCGCG%29n|genus:Simple_repeat;Target=species:%28CCGCG%29n|genus:Simple_repeat 1 42 + +HS04636 repeatmasker match_part 939 980 13 + . ID=HS04636:hsp:5:1.3.0.0;Parent=HS04636:hit:5:1.3.0.0;Target=species:%2528CCGCG%2529n|genus:Simple_repeat 1 42 + +HS04636 repeatmasker match 6918 6977 17 + . ID=HS04636:hit:6:1.3.0.0;Name=species:%28TATT%29n|genus:Simple_repeat;Target=species:%28TATT%29n|genus:Simple_repeat 1 54 + +HS04636 repeatmasker match_part 6918 6977 17 + . ID=HS04636:hsp:6:1.3.0.0;Parent=HS04636:hit:6:1.3.0.0;Target=species:%2528TATT%2529n|genus:Simple_repeat 1 54 + +HS04636 repeatmasker match 4518 4541 17 + . ID=HS04636:hit:7:1.3.0.0;Name=species:%28TTTA%29n|genus:Simple_repeat;Target=species:%28TTTA%29n|genus:Simple_repeat 1 24 + +HS04636 repeatmasker match_part 4518 4541 17 + . ID=HS04636:hsp:7:1.3.0.0;Parent=HS04636:hit:7:1.3.0.0;Target=species:%2528TTTA%2529n|genus:Simple_repeat 1 24 + +### +HS04636 blastn expressed_sequence_match 1815 6903 120 + . ID=HS04636:hit:8:3.12.0.0;Name=HS04636.g1;score=120 +HS04636 blastn match_part 1815 1934 120 + . ID=HS04636:hsp:8:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 129 248 +;Gap=M120 +HS04636 blastn match_part 1815 1845 31 + . ID=HS04636:hsp:9:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 50 80 +;Gap=M31 +HS04636 blastn match_part 2055 2198 144 + . ID=HS04636:hsp:10:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 249 392 +;Gap=M144 +HS04636 blastn match_part 2852 2997 146 + . ID=HS04636:hsp:11:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 393 538 +;Gap=M146 +HS04636 blastn match_part 3424 3609 186 + . ID=HS04636:hsp:12:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 535 720 +;Gap=M186 +HS04636 blastn match_part 4339 4423 85 + . ID=HS04636:hsp:13:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 718 802 +;Gap=M85 +HS04636 blastn match_part 4541 4790 250 + . ID=HS04636:hsp:14:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 801 1050 +;Gap=M250 +HS04636 blastn match_part 5068 5360 293 + . ID=HS04636:hsp:15:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 1046 1338 +;Gap=M293 +HS04636 blastn match_part 5859 6008 150 + . ID=HS04636:hsp:16:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 1336 1485 +;Gap=M150 +HS04636 blastn match_part 6490 6903 414 + . ID=HS04636:hsp:17:3.12.0.0;Parent=HS04636:hit:8:3.12.0.0;Target=HS04636.g1 1481 1894 +;Gap=M414 +HS04636 est2genome expressed_sequence_match 1813 6903 8728 + . ID=HS04636:hit:9:3.12.0.0;Name=HS04636.g1;score=8728 +HS04636 est2genome match_part 1813 1934 8728 + . ID=HS04636:hsp:18:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 127 248 +;Gap=M122 +HS04636 est2genome match_part 2055 2198 8728 + . ID=HS04636:hsp:19:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 249 392 +;Gap=M144 +HS04636 est2genome match_part 2852 2995 8728 + . ID=HS04636:hsp:20:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 393 536 +;Gap=M144 +HS04636 est2genome match_part 3426 3607 8728 + . ID=HS04636:hsp:21:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 537 718 +;Gap=M182 +HS04636 est2genome match_part 4340 4423 8728 + . ID=HS04636:hsp:22:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 719 802 +;Gap=M84 +HS04636 est2genome match_part 4543 4789 8728 + . ID=HS04636:hsp:23:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 803 1049 +;Gap=M247 +HS04636 est2genome match_part 5072 5358 8728 + . ID=HS04636:hsp:24:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 1050 1336 +;Gap=M287 +HS04636 est2genome match_part 5860 6007 8728 + . ID=HS04636:hsp:25:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 1337 1484 +;Gap=M148 +HS04636 est2genome match_part 6494 6903 8728 + . ID=HS04636:hsp:26:3.12.0.0;Parent=HS04636:hit:9:3.12.0.0;Target=HS04636.g1 1485 1894 +;Gap=M410