diff test-data/snap.hmm @ 0:16e44ec438c4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 2896dcfd180800d00ea413a59264ef8b11788b8e
author iuc
date Thu, 19 Oct 2017 15:58:39 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/snap.hmm	Thu Oct 19 15:58:39 2017 -0400
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+zoeHMM snap_training 6 8 6 7
+
+<STATES>
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+Intron	0.1	0.1	0	0	geometric
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+<STATE_TRANSITIONS>
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+
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+
+Intron LUT 5 4 4 0 0.000
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+	0.234	-0.503	-1.087	0.720	
+	-0.585	-0.585	1.000	-0.585	
+	-0.503	-1.087	0.497	0.497	
+	0.052	-0.433	0.052	0.245	
+	0.752	-0.663	-2.248	0.559	
+	0.415	0.415	-1.585	0.000	
+	-0.115	-0.115	0.107	0.107	
+	0.663	-0.415	-1.263	0.322	
+	0.234	-1.087	-2.087	1.082	
+	0.193	-0.070	-1.392	0.608	
+	-0.143	-2.143	-0.558	1.130	
+	0.678	-0.644	-0.059	-0.322	
+	0.585	0.000	-1.000	0.000	
+	-0.737	0.263	-0.322	0.485	
+	0.152	-0.170	-0.585	0.415	
+	-0.737	0.263	0.263	0.000	
+	0.930	-0.070	-1.392	-0.392	
+	-1.170	1.152	-1.170	-0.170	
+	-1.644	-0.322	0.678	0.356	
+	-0.585	-0.585	1.000	-0.585	
+	0.193	0.778	-0.807	-0.807	
+	-0.585	1.000	-0.585	-0.585	
+	0.193	0.193	-0.807	0.193	
+	0.608	-1.392	-0.070	0.193	
+	0.263	0.678	-1.322	-0.322	
+	-0.585	0.637	-0.585	0.152	
+	0.415	-0.237	-0.237	-0.044	
+	0.759	-1.700	-0.115	0.107	
+	0.678	0.485	-1.322	-0.737	
+	-1.322	0.263	-0.322	0.678	
+	0.126	0.126	-0.459	0.126	
+	0.000	-0.322	0.678	-0.737	
+	0.222	0.000	-0.585	0.222	
+	-0.322	-0.322	0.678	-0.322	
+	0.193	-0.222	-0.222	0.193	
+	-1.170	-1.170	0.152	1.000	
+	-1.248	0.074	-0.663	0.922	
+	-0.059	-0.644	0.526	-0.059	
+	-0.524	0.061	0.061	0.284	
+	0.263	-0.585	-0.322	0.415	
+	-0.503	0.497	-2.087	0.720	
+	-0.379	-0.700	1.107	-1.115	
+	-0.193	-1.000	-0.678	1.000	
+	1.037	-0.700	-0.963	-0.285	
+	0.152	0.152	-2.170	0.637	
+	0.245	-0.170	-1.170	0.567	
+	0.255	-1.248	-1.248	0.974	
+	0.515	-0.222	0.000	-0.485	
+	0.798	-0.939	-1.524	0.476	
+	-0.170	-1.170	-0.170	0.830	
+	0.126	-0.044	-1.459	0.656	
+	0.816	0.163	-1.059	-0.644	
+	0.000	0.585	-1.000	0.000	
+	0.263	-0.737	-0.737	0.678	
+	0.227	-1.358	-0.188	0.642	
+	-0.026	-0.663	-0.373	0.691	
+	0.491	-0.209	-2.209	0.598	
+	-0.115	-1.285	-0.115	0.802	
+	0.258	-1.015	-0.899	0.826	
+
+Start SDT 3 0 4 2 0.000
+	ATG WMM 15 9 4 0 0.000
+		-0.585	-0.585	1.000	-0.585	
+		-0.585	0.415	0.415	-0.585	
+		-0.585	0.415	-0.585	0.415	
+		-0.585	-0.585	1.000	-0.585	
+		-0.585	0.415	-0.585	0.415	
+		0.415	0.415	-0.585	-0.585	
+		0.415	-0.585	-0.585	0.415	
+		-0.585	0.415	0.415	-0.585	
+		-0.585	0.415	-0.585	0.415	
+		1.000	-0.585	-0.585	-0.585	
+		-0.585	-0.585	-0.585	1.000	
+		-0.585	-0.585	1.000	-0.585	
+		0.415	0.415	-0.585	-0.585	
+		-0.585	-0.585	0.415	0.415	
+		-0.585	-0.585	0.415	0.415	
+	NNN TRM 0 0 0 0 0.000
+
+Stop SDT 3 0 4 4 0.000
+	TAA WMM 9 6 4 0 0.000
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+		0.000	0.000	0.000	0.000	
+	TAG WMM 9 6 4 0 0.000
+		-0.322	-0.322	0.678	-0.322	
+		0.678	-0.322	-0.322	-0.322	
+		0.678	-0.322	-0.322	-0.322	
+		-0.322	0.678	-0.322	-0.322	
+		-0.322	-0.322	-0.322	0.678	
+		-0.322	-0.322	0.678	-0.322	
+		-0.322	-0.322	-0.322	0.678	
+		0.678	-0.322	-0.322	-0.322	
+		-0.322	-0.322	0.678	-0.322	
+	TGA WMM 9 6 4 0 0.000
+		-0.322	-0.322	0.678	-0.322	
+		-0.322	0.678	-0.322	-0.322	
+		-0.322	-0.322	0.678	-0.322	
+		-0.322	-0.322	-0.322	0.678	
+		-0.322	-0.322	0.678	-0.322	
+		-0.322	-0.322	0.678	-0.322	
+		-0.322	-0.322	-0.322	0.678	
+		-0.322	-0.322	0.678	-0.322	
+		0.678	-0.322	-0.322	-0.322	
+	NNN TRM 0 0 0 0 0.000
+