Mercurial > repos > iuc > maker
diff test-data/evidences_norm.gff3 @ 5:5201ec38c01f draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 5bef07276e14b38cca31ef724d0b4d2f55809715"
author | iuc |
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date | Mon, 28 Dec 2020 23:19:04 +0000 |
parents | 16e44ec438c4 |
children |
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--- a/test-data/evidences_norm.gff3 Thu Oct 10 02:56:46 2019 -0400 +++ b/test-data/evidences_norm.gff3 Mon Dec 28 23:19:04 2020 +0000 @@ -1,42 +1,66 @@ ##gff-version 3 HS08198 . contig 1 2344 . . . ID=HS08198;Name=HS08198 ### -HS08198 blastn expressed_sequence_match 444 1848 140 + . ID=HS08198:hit:2:3.2.0.0;Name=HS08198.g2 -HS08198 blastn match_part 444 583 140 + . ID=HS08198:hsp:19:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 79 218 +;Gap=M140 -HS08198 blastn match_part 445 523 79 + . ID=HS08198:hsp:20:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 1 79 +;Gap=M79 -HS08198 blastn match_part 808 895 88 + . ID=HS08198:hsp:21:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 214 301 +;Gap=M88 -HS08198 blastn match_part 1053 1123 71 + . ID=HS08198:hsp:22:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 -HS08198 blastn match_part 1206 1315 110 + . ID=HS08198:hsp:23:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 370 479 +;Gap=M110 -HS08198 blastn match_part 1586 1689 104 + . ID=HS08198:hsp:24:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 479 582 +;Gap=M104 -HS08198 blastn match_part 1771 1848 78 + . ID=HS08198:hsp:25:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 581 658 +;Gap=M78 -HS08198 est2genome expressed_sequence_match 352 1848 2869 + . ID=HS08198:hit:3:3.2.0.0;Name=HS08198.g2 -HS08198 est2genome match_part 352 397 2869 + . ID=HS08198:hsp:26:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 3 52 +;Gap=M18 D1 M2 I4 M10 I1 M15 -HS08198 est2genome match_part 421 582 2869 + . ID=HS08198:hsp:27:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 53 217 +;Gap=M4 I2 M3 I3 M5 D1 M9 D1 M139 -HS08198 est2genome match_part 812 894 2869 + . ID=HS08198:hsp:28:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 218 300 +;Gap=M83 -HS08198 est2genome match_part 1053 1123 2869 + . ID=HS08198:hsp:29:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 -HS08198 est2genome match_part 1208 1315 2869 + . ID=HS08198:hsp:30:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 372 479 +;Gap=M108 -HS08198 est2genome match_part 1587 1688 2869 + . ID=HS08198:hsp:31:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 480 581 +;Gap=M102 -HS08198 est2genome match_part 1772 1848 2869 + . ID=HS08198:hsp:32:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 582 658 +;Gap=M77 +HS08198 repeatmasker match 578 651 13 + . ID=HS08198:hit:12:1.3.0.0;Name=species:%28AGAAGGT%29n|genus:Simple_repeat;Target=species:%28AGAAGGT%29n|genus:Simple_repeat 1 75 + +HS08198 repeatmasker match_part 578 651 13 + . ID=HS08198:hsp:29:1.3.0.0;Parent=HS08198:hit:12:1.3.0.0;Target=species:%2528AGAAGGT%2529n|genus:Simple_repeat 1 75 + +### +HS08198 blastn expressed_sequence_match 444 1848 140 + . ID=HS08198:hit:13:3.2.0.0;Name=HS08198.g2 +HS08198 blastn match_part 444 583 140 + . ID=HS08198:hsp:30:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 79 218 +;Gap=M140 +HS08198 blastn match_part 445 523 79 + . ID=HS08198:hsp:31:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 1 79 +;Gap=M79 +HS08198 blastn match_part 808 895 88 + . ID=HS08198:hsp:32:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 214 301 +;Gap=M88 +HS08198 blastn match_part 1053 1123 71 + . ID=HS08198:hsp:33:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 +HS08198 blastn match_part 1206 1315 110 + . ID=HS08198:hsp:34:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 370 479 +;Gap=M110 +HS08198 blastn match_part 1586 1689 104 + . ID=HS08198:hsp:35:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 479 582 +;Gap=M104 +HS08198 blastn match_part 1771 1848 78 + . ID=HS08198:hsp:36:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 581 658 +;Gap=M78 +HS08198 est2genome expressed_sequence_match 352 1848 2869 + . ID=HS08198:hit:14:3.2.0.0;Name=HS08198.g2 +HS08198 est2genome match_part 352 397 2869 + . ID=HS08198:hsp:37:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 3 52 +;Gap=M18 D1 M2 I4 M10 I1 M15 +HS08198 est2genome match_part 421 582 2869 + . ID=HS08198:hsp:38:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 53 217 +;Gap=M4 I2 M3 I3 M5 D1 M9 D1 M139 +HS08198 est2genome match_part 812 894 2869 + . ID=HS08198:hsp:39:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 218 300 +;Gap=M83 +HS08198 est2genome match_part 1053 1123 2869 + . ID=HS08198:hsp:40:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 +HS08198 est2genome match_part 1208 1315 2869 + . ID=HS08198:hsp:41:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 372 479 +;Gap=M108 +HS08198 est2genome match_part 1587 1688 2869 + . ID=HS08198:hsp:42:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 480 581 +;Gap=M102 +HS08198 est2genome match_part 1772 1848 2869 + . ID=HS08198:hsp:43:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 582 658 +;Gap=M77 HS04636 . contig 1 9453 . . . ID=HS04636;Name=HS04636 ### -HS04636 blastn expressed_sequence_match 1815 6903 120 + . ID=HS04636:hit:0:3.2.0.0;Name=HS04636.g1 -HS04636 blastn match_part 1815 1934 120 + . ID=HS04636:hsp:0:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 129 248 +;Gap=M120 -HS04636 blastn match_part 1815 1845 31 + . ID=HS04636:hsp:1:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 50 80 +;Gap=M31 -HS04636 blastn match_part 2055 2198 144 + . ID=HS04636:hsp:2:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 249 392 +;Gap=M144 -HS04636 blastn match_part 2852 2997 146 + . ID=HS04636:hsp:3:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 393 538 +;Gap=M146 -HS04636 blastn match_part 3424 3609 186 + . ID=HS04636:hsp:4:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 535 720 +;Gap=M186 -HS04636 blastn match_part 4339 4423 85 + . ID=HS04636:hsp:5:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 718 802 +;Gap=M85 -HS04636 blastn match_part 4541 4790 250 + . ID=HS04636:hsp:6:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 801 1050 +;Gap=M250 -HS04636 blastn match_part 5068 5360 293 + . ID=HS04636:hsp:7:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 1046 1338 +;Gap=M293 -HS04636 blastn match_part 5859 6008 150 + . ID=HS04636:hsp:8:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 1336 1485 +;Gap=M150 -HS04636 blastn match_part 6490 6903 414 + . ID=HS04636:hsp:9:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 1481 1894 +;Gap=M414 -HS04636 est2genome expressed_sequence_match 1813 6903 8728 + . ID=HS04636:hit:1:3.2.0.0;Name=HS04636.g1 -HS04636 est2genome match_part 1813 1934 8728 + . ID=HS04636:hsp:10:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 127 248 +;Gap=M122 -HS04636 est2genome match_part 2055 2198 8728 + . ID=HS04636:hsp:11:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 249 392 +;Gap=M144 -HS04636 est2genome match_part 2852 2995 8728 + . ID=HS04636:hsp:12:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 393 536 +;Gap=M144 -HS04636 est2genome match_part 3426 3607 8728 + . ID=HS04636:hsp:13:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 537 718 +;Gap=M182 -HS04636 est2genome match_part 4340 4423 8728 + . ID=HS04636:hsp:14:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 719 802 +;Gap=M84 -HS04636 est2genome match_part 4543 4789 8728 + . ID=HS04636:hsp:15:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 803 1049 +;Gap=M247 -HS04636 est2genome match_part 5072 5358 8728 + . ID=HS04636:hsp:16:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 1050 1336 +;Gap=M287 -HS04636 est2genome match_part 5860 6007 8728 + . ID=HS04636:hsp:17:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 1337 1484 +;Gap=M148 -HS04636 est2genome match_part 6494 6903 8728 + . ID=HS04636:hsp:18:3.2.0.0;Parent=HS04636:hit:1:3.2.0.0;Target=HS04636.g1 1485 1894 +;Gap=M410 +HS04636 repeatmasker match 3840 3847 17 + . ID=HS04636:hit:0:1.3.0.0;Name=species:%28ATAC%29n|genus:Simple_repeat;Target=species:%28ATAC%29n|genus:Simple_repeat 3 57 + +HS04636 repeatmasker match_part 3840 3847 17 + . ID=HS04636:hsp:0:1.3.0.0;Parent=HS04636:hit:0:1.3.0.0;Target=species:%2528ATAC%2529n|genus:Simple_repeat 3 57 + +HS04636 repeatmasker match 9419 9435 16 + . ID=HS04636:hit:1:1.3.0.0;Name=species:%28A%29n|genus:Simple_repeat;Target=species:%28A%29n|genus:Simple_repeat 1 17 + +HS04636 repeatmasker match_part 9419 9435 16 + . ID=HS04636:hsp:1:1.3.0.0;Parent=HS04636:hit:1:1.3.0.0;Target=species:%2528A%2529n|genus:Simple_repeat 1 17 + +HS04636 repeatmasker match 3852 3888 12 + . ID=HS04636:hit:2:1.3.0.0;Name=species:%28TTGTAAT%29n|genus:Simple_repeat;Target=species:%28TTGTAAT%29n|genus:Simple_repeat 1 37 + +HS04636 repeatmasker match_part 3852 3888 12 + . ID=HS04636:hsp:2:1.3.0.0;Parent=HS04636:hit:2:1.3.0.0;Target=species:%2528TTGTAAT%2529n|genus:Simple_repeat 1 37 + +HS04636 repeatmasker match 6918 6977 17 + . ID=HS04636:hit:3:1.3.0.0;Name=species:%28TATT%29n|genus:Simple_repeat;Target=species:%28TATT%29n|genus:Simple_repeat 1 54 + +HS04636 repeatmasker match_part 6918 6977 17 + . ID=HS04636:hsp:3:1.3.0.0;Parent=HS04636:hit:3:1.3.0.0;Target=species:%2528TATT%2529n|genus:Simple_repeat 1 54 + +HS04636 repeatmasker match 3791 3839 22 + . ID=HS04636:hit:4:1.3.0.0;Name=species:%28AC%29n|genus:Simple_repeat;Target=species:%28AC%29n|genus:Simple_repeat 1 49 + +HS04636 repeatmasker match_part 3791 3839 22 + . ID=HS04636:hsp:4:1.3.0.0;Parent=HS04636:hit:4:1.3.0.0;Target=species:%2528AC%2529n|genus:Simple_repeat 1 49 + +HS04636 repeatmasker match 939 980 13 + . ID=HS04636:hit:5:1.3.0.0;Name=species:%28CCGCG%29n|genus:Simple_repeat;Target=species:%28CCGCG%29n|genus:Simple_repeat 1 42 + +HS04636 repeatmasker match_part 939 980 13 + . ID=HS04636:hsp:5:1.3.0.0;Parent=HS04636:hit:5:1.3.0.0;Target=species:%2528CCGCG%2529n|genus:Simple_repeat 1 42 + +HS04636 repeatmasker match 4518 4541 17 + . ID=HS04636:hit:6:1.3.0.0;Name=species:%28TTTA%29n|genus:Simple_repeat;Target=species:%28TTTA%29n|genus:Simple_repeat 1 24 + +HS04636 repeatmasker match_part 4518 4541 17 + . ID=HS04636:hsp:6:1.3.0.0;Parent=HS04636:hit:6:1.3.0.0;Target=species:%2528TTTA%2529n|genus:Simple_repeat 1 24 + +HS04636 repeatmasker match 1124 1335 391 + . ID=HS04636:hit:7:1.3.0.0;Name=species:MIRb|genus:SINE%2FMIR;Target=species:MIRb|genus:SINE%2FMIR 2 217 + +HS04636 repeatmasker match_part 1124 1335 391 + . ID=HS04636:hsp:7:1.3.0.0;Parent=HS04636:hit:7:1.3.0.0;Target=species:MIRb|genus:SINE%252FMIR 2 217 + +HS04636 repeatmasker match 6050 6359 2256 + . ID=HS04636:hit:8:1.3.0.0;Name=species:AluSc8|genus:SINE%2FAlu;Target=species:AluSc8|genus:SINE%2FAlu 1 311 + +HS04636 repeatmasker match_part 6050 6359 2256 + . ID=HS04636:hsp:8:1.3.0.0;Parent=HS04636:hit:8:1.3.0.0;Target=species:AluSc8|genus:SINE%252FAlu 1 311 + +HS04636 repeatmasker match 8994 9045 191 + . ID=HS04636:hit:9:1.3.0.0;Name=species:L2a|genus:LINE%2FL2;Target=species:L2a|genus:LINE%2FL2 3374 3425 + +HS04636 repeatmasker match_part 8994 9045 191 + . ID=HS04636:hsp:9:1.3.0.0;Parent=HS04636:hit:9:1.3.0.0;Target=species:L2a|genus:LINE%252FL2 3374 3425 + +### +HS04636 blastn expressed_sequence_match 1815 6903 120 + . ID=HS04636:hit:10:3.2.0.0;Name=HS04636.g1 +HS04636 blastn match_part 1815 1934 120 + . ID=HS04636:hsp:10:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 129 248 +;Gap=M120 +HS04636 blastn match_part 1815 1845 31 + . ID=HS04636:hsp:11:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 50 80 +;Gap=M31 +HS04636 blastn match_part 2055 2198 144 + . ID=HS04636:hsp:12:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 249 392 +;Gap=M144 +HS04636 blastn match_part 2852 2997 146 + . ID=HS04636:hsp:13:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 393 538 +;Gap=M146 +HS04636 blastn match_part 3424 3609 186 + . ID=HS04636:hsp:14:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 535 720 +;Gap=M186 +HS04636 blastn match_part 4339 4423 85 + . ID=HS04636:hsp:15:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 718 802 +;Gap=M85 +HS04636 blastn match_part 4541 4790 250 + . ID=HS04636:hsp:16:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 801 1050 +;Gap=M250 +HS04636 blastn match_part 5068 5360 293 + . ID=HS04636:hsp:17:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 1046 1338 +;Gap=M293 +HS04636 blastn match_part 5859 5999 141 + . ID=HS04636:hsp:18:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 1336 1476 +;Gap=M141 +HS04636 blastn match_part 6490 6903 414 + . ID=HS04636:hsp:19:3.2.0.0;Parent=HS04636:hit:10:3.2.0.0;Target=HS04636.g1 1481 1894 +;Gap=M414 +HS04636 est2genome expressed_sequence_match 1813 6903 8728 + . ID=HS04636:hit:11:3.2.0.0;Name=HS04636.g1 +HS04636 est2genome match_part 1813 1934 8728 + . ID=HS04636:hsp:20:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 127 248 +;Gap=M122 +HS04636 est2genome match_part 2055 2198 8728 + . ID=HS04636:hsp:21:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 249 392 +;Gap=M144 +HS04636 est2genome match_part 2852 2995 8728 + . ID=HS04636:hsp:22:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 393 536 +;Gap=M144 +HS04636 est2genome match_part 3426 3607 8728 + . ID=HS04636:hsp:23:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 537 718 +;Gap=M182 +HS04636 est2genome match_part 4340 4423 8728 + . ID=HS04636:hsp:24:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 719 802 +;Gap=M84 +HS04636 est2genome match_part 4543 4789 8728 + . ID=HS04636:hsp:25:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 803 1049 +;Gap=M247 +HS04636 est2genome match_part 5072 5358 8728 + . ID=HS04636:hsp:26:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 1050 1336 +;Gap=M287 +HS04636 est2genome match_part 5860 6007 8728 + . ID=HS04636:hsp:27:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 1337 1484 +;Gap=M148 +HS04636 est2genome match_part 6494 6903 8728 + . ID=HS04636:hsp:28:3.2.0.0;Parent=HS04636:hit:11:3.2.0.0;Target=HS04636.g1 1485 1894 +;Gap=M410