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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 2896dcfd180800d00ea413a59264ef8b11788b8e
author iuc
date Thu, 19 Oct 2017 15:58:39 -0400
parents
children 5201ec38c01f
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##gff-version 3
HS08198	.	contig	1	2344	.	.	.	ID=HS08198;Name=HS08198
HS08198	augustus_masked	match	445	1848	1	+	.	ID=HS08198:hit:15:4.5.0.0;Name=augustus_masked-HS08198-abinit-gene-0.2-mRNA-1
HS08198	augustus_masked	match_part	445	582	1	+	.	ID=HS08198:hsp:62:4.5.0.0;Parent=HS08198:hit:15:4.5.0.0;Target=augustus_masked-HS08198-abinit-gene-0.2-mRNA-1 1 138 +;Gap=M138
HS08198	augustus_masked	match_part	812	894	1	+	.	ID=HS08198:hsp:63:4.5.0.0;Parent=HS08198:hit:15:4.5.0.0;Target=augustus_masked-HS08198-abinit-gene-0.2-mRNA-1 139 221 +;Gap=M83
HS08198	augustus_masked	match_part	1053	1123	1	+	.	ID=HS08198:hsp:64:4.5.0.0;Parent=HS08198:hit:15:4.5.0.0;Target=augustus_masked-HS08198-abinit-gene-0.2-mRNA-1 222 292 +;Gap=M71
HS08198	augustus_masked	match_part	1208	1315	1	+	.	ID=HS08198:hsp:65:4.5.0.0;Parent=HS08198:hit:15:4.5.0.0;Target=augustus_masked-HS08198-abinit-gene-0.2-mRNA-1 293 400 +;Gap=M108
HS08198	augustus_masked	match_part	1587	1688	1	+	.	ID=HS08198:hsp:66:4.5.0.0;Parent=HS08198:hit:15:4.5.0.0;Target=augustus_masked-HS08198-abinit-gene-0.2-mRNA-1 401 502 +;Gap=M102
HS08198	augustus_masked	match_part	1772	1848	1	+	.	ID=HS08198:hsp:67:4.5.0.0;Parent=HS08198:hit:15:4.5.0.0;Target=augustus_masked-HS08198-abinit-gene-0.2-mRNA-1 503 579 +;Gap=M77
HS08198	snap_masked	match	99	1848	233.121	+	.	ID=HS08198:hit:16:4.5.0.0;Name=snap_masked-HS08198-abinit-gene-0.1-mRNA-1
HS08198	snap_masked	match_part	99	107	-2.800	+	.	ID=HS08198:hsp:68:4.5.0.0;Parent=HS08198:hit:16:4.5.0.0;Target=snap_masked-HS08198-abinit-gene-0.1-mRNA-1 1 9 +;Gap=M9
HS08198	snap_masked	match_part	421	582	45.298	+	.	ID=HS08198:hsp:69:4.5.0.0;Parent=HS08198:hit:16:4.5.0.0;Target=snap_masked-HS08198-abinit-gene-0.1-mRNA-1 10 171 +;Gap=M162
HS08198	snap_masked	match_part	812	874	24.711	+	.	ID=HS08198:hsp:70:4.5.0.0;Parent=HS08198:hit:16:4.5.0.0;Target=snap_masked-HS08198-abinit-gene-0.1-mRNA-1 172 234 +;Gap=M63
HS08198	snap_masked	match_part	1024	1123	34.281	+	.	ID=HS08198:hsp:71:4.5.0.0;Parent=HS08198:hit:16:4.5.0.0;Target=snap_masked-HS08198-abinit-gene-0.1-mRNA-1 235 334 +;Gap=M100
HS08198	snap_masked	match_part	1208	1315	53.852	+	.	ID=HS08198:hsp:72:4.5.0.0;Parent=HS08198:hit:16:4.5.0.0;Target=snap_masked-HS08198-abinit-gene-0.1-mRNA-1 335 442 +;Gap=M108
HS08198	snap_masked	match_part	1587	1688	41.983	+	.	ID=HS08198:hsp:73:4.5.0.0;Parent=HS08198:hit:16:4.5.0.0;Target=snap_masked-HS08198-abinit-gene-0.1-mRNA-1 443 544 +;Gap=M102
HS08198	snap_masked	match_part	1772	1848	35.796	+	.	ID=HS08198:hsp:74:4.5.0.0;Parent=HS08198:hit:16:4.5.0.0;Target=snap_masked-HS08198-abinit-gene-0.1-mRNA-1 545 621 +;Gap=M77
###
HS08198	repeatmasker	match	578	651	13	+	.	ID=HS08198:hit:12:1.3.0.0;Name=species:%28AGAAGGT%29n|genus:Simple_repeat;Target=species:%28AGAAGGT%29n|genus:Simple_repeat 1 75 +
HS08198	repeatmasker	match_part	578	651	13	+	.	ID=HS08198:hsp:47:1.3.0.0;Parent=HS08198:hit:12:1.3.0.0;Target=species:%2528AGAAGGT%2529n|genus:Simple_repeat 1 75 +
###
HS08198	blastn	expressed_sequence_match	444	1848	140	+	.	ID=HS08198:hit:13:3.2.0.0;Name=HS08198.g2
HS08198	blastn	match_part	444	583	140	+	.	ID=HS08198:hsp:48:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 79 218 +;Gap=M140
HS08198	blastn	match_part	445	523	79	+	.	ID=HS08198:hsp:49:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 1 79 +;Gap=M79
HS08198	blastn	match_part	808	895	88	+	.	ID=HS08198:hsp:50:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 214 301 +;Gap=M88
HS08198	blastn	match_part	1053	1123	71	+	.	ID=HS08198:hsp:51:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71
HS08198	blastn	match_part	1206	1315	110	+	.	ID=HS08198:hsp:52:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 370 479 +;Gap=M110
HS08198	blastn	match_part	1586	1689	104	+	.	ID=HS08198:hsp:53:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 479 582 +;Gap=M104
HS08198	blastn	match_part	1771	1848	78	+	.	ID=HS08198:hsp:54:3.2.0.0;Parent=HS08198:hit:13:3.2.0.0;Target=HS08198.g2 581 658 +;Gap=M78
HS08198	est2genome	expressed_sequence_match	352	1848	2869	+	.	ID=HS08198:hit:14:3.2.0.0;Name=HS08198.g2
HS08198	est2genome	match_part	352	397	2869	+	.	ID=HS08198:hsp:55:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 3 52 +;Gap=M18 D1 M2 I4 M10 I1 M15
HS08198	est2genome	match_part	421	582	2869	+	.	ID=HS08198:hsp:56:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 53 217 +;Gap=M4 I2 M3 I3 M5 D1 M9 D1 M139
HS08198	est2genome	match_part	812	894	2869	+	.	ID=HS08198:hsp:57:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 218 300 +;Gap=M83
HS08198	est2genome	match_part	1053	1123	2869	+	.	ID=HS08198:hsp:58:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71
HS08198	est2genome	match_part	1208	1315	2869	+	.	ID=HS08198:hsp:59:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 372 479 +;Gap=M108
HS08198	est2genome	match_part	1587	1688	2869	+	.	ID=HS08198:hsp:60:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 480 581 +;Gap=M102
HS08198	est2genome	match_part	1772	1848	2869	+	.	ID=HS08198:hsp:61:3.2.0.0;Parent=HS08198:hit:14:3.2.0.0;Target=HS08198.g2 582 658 +;Gap=M77
HS04636	.	contig	1	9453	.	.	.	ID=HS04636;Name=HS04636
HS04636	augustus_masked	match	966	6903	1	+	.	ID=HS04636:hit:10:4.5.0.0;Name=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1
HS04636	augustus_masked	match_part	966	1017	1	+	.	ID=HS04636:hsp:27:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 1 52 +;Gap=M52
HS04636	augustus_masked	match_part	1818	1934	1	+	.	ID=HS04636:hsp:28:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 53 169 +;Gap=M117
HS04636	augustus_masked	match_part	2055	2198	1	+	.	ID=HS04636:hsp:29:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 170 313 +;Gap=M144
HS04636	augustus_masked	match_part	2852	2995	1	+	.	ID=HS04636:hsp:30:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 314 457 +;Gap=M144
HS04636	augustus_masked	match_part	3426	3607	1	+	.	ID=HS04636:hsp:31:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 458 639 +;Gap=M182
HS04636	augustus_masked	match_part	4340	4423	1	+	.	ID=HS04636:hsp:32:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 640 723 +;Gap=M84
HS04636	augustus_masked	match_part	4543	4789	1	+	.	ID=HS04636:hsp:33:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 724 970 +;Gap=M247
HS04636	augustus_masked	match_part	5072	5358	1	+	.	ID=HS04636:hsp:34:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 971 1257 +;Gap=M287
HS04636	augustus_masked	match_part	5860	6007	1	+	.	ID=HS04636:hsp:35:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 1258 1405 +;Gap=M148
HS04636	augustus_masked	match_part	6494	6903	1	+	.	ID=HS04636:hsp:36:4.5.0.0;Parent=HS04636:hit:10:4.5.0.0;Target=augustus_masked-HS04636-abinit-gene-0.3-mRNA-1 1406 1815 +;Gap=M410
HS04636	snap_masked	match	1862	6903	761.916	+	.	ID=HS04636:hit:11:4.5.0.0;Name=snap_masked-HS04636-abinit-gene-0.1-mRNA-1
HS04636	snap_masked	match_part	1862	1867	8.523	+	.	ID=HS04636:hsp:37:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 1 6 +;Gap=M6
HS04636	snap_masked	match_part	1883	1934	20.348	+	.	ID=HS04636:hsp:38:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 7 58 +;Gap=M52
HS04636	snap_masked	match_part	2055	2198	69.846	+	.	ID=HS04636:hsp:39:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 59 202 +;Gap=M144
HS04636	snap_masked	match_part	2852	2995	67.055	+	.	ID=HS04636:hsp:40:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 203 346 +;Gap=M144
HS04636	snap_masked	match_part	3426	3607	77.942	+	.	ID=HS04636:hsp:41:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 347 528 +;Gap=M182
HS04636	snap_masked	match_part	4340	4423	47.588	+	.	ID=HS04636:hsp:42:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 529 612 +;Gap=M84
HS04636	snap_masked	match_part	4543	4789	112.472	+	.	ID=HS04636:hsp:43:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 613 859 +;Gap=M247
HS04636	snap_masked	match_part	5072	5358	122.974	+	.	ID=HS04636:hsp:44:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 860 1146 +;Gap=M287
HS04636	snap_masked	match_part	5860	6007	72.046	+	.	ID=HS04636:hsp:45:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 1147 1294 +;Gap=M148
HS04636	snap_masked	match_part	6494	6903	163.122	+	.	ID=HS04636:hsp:46:4.5.0.0;Parent=HS04636:hit:11:4.5.0.0;Target=snap_masked-HS04636-abinit-gene-0.1-mRNA-1 1295 1704 +;Gap=M410
###
HS04636	repeatmasker	match	3852	3888	12	+	.	ID=HS04636:hit:0:1.3.0.0;Name=species:%28TTGTAAT%29n|genus:Simple_repeat;Target=species:%28TTGTAAT%29n|genus:Simple_repeat 1 37 +
HS04636	repeatmasker	match_part	3852	3888	12	+	.	ID=HS04636:hsp:0:1.3.0.0;Parent=HS04636:hit:0:1.3.0.0;Target=species:%2528TTGTAAT%2529n|genus:Simple_repeat 1 37 +
HS04636	repeatmasker	match	4518	4541	17	+	.	ID=HS04636:hit:1:1.3.0.0;Name=species:%28TTTA%29n|genus:Simple_repeat;Target=species:%28TTTA%29n|genus:Simple_repeat 1 24 +
HS04636	repeatmasker	match_part	4518	4541	17	+	.	ID=HS04636:hsp:1:1.3.0.0;Parent=HS04636:hit:1:1.3.0.0;Target=species:%2528TTTA%2529n|genus:Simple_repeat 1 24 +
HS04636	repeatmasker	match	939	980	13	+	.	ID=HS04636:hit:2:1.3.0.0;Name=species:%28CCGCG%29n|genus:Simple_repeat;Target=species:%28CCGCG%29n|genus:Simple_repeat 1 42 +
HS04636	repeatmasker	match_part	939	980	13	+	.	ID=HS04636:hsp:2:1.3.0.0;Parent=HS04636:hit:2:1.3.0.0;Target=species:%2528CCGCG%2529n|genus:Simple_repeat 1 42 +
HS04636	repeatmasker	match	3791	3839	22	+	.	ID=HS04636:hit:3:1.3.0.0;Name=species:%28AC%29n|genus:Simple_repeat;Target=species:%28AC%29n|genus:Simple_repeat 1 49 +
HS04636	repeatmasker	match_part	3791	3839	22	+	.	ID=HS04636:hsp:3:1.3.0.0;Parent=HS04636:hit:3:1.3.0.0;Target=species:%2528AC%2529n|genus:Simple_repeat 1 49 +
HS04636	repeatmasker	match	6028	6072	21	+	.	ID=HS04636:hit:4:1.3.0.0;Name=species:%28TTGT%29n|genus:Simple_repeat;Target=species:%28TTGT%29n|genus:Simple_repeat 1 46 +
HS04636	repeatmasker	match_part	6028	6072	21	+	.	ID=HS04636:hsp:4:1.3.0.0;Parent=HS04636:hit:4:1.3.0.0;Target=species:%2528TTGT%2529n|genus:Simple_repeat 1 46 +
HS04636	repeatmasker	match	6918	6977	17	+	.	ID=HS04636:hit:5:1.3.0.0;Name=species:%28TATT%29n|genus:Simple_repeat;Target=species:%28TATT%29n|genus:Simple_repeat 1 54 +
HS04636	repeatmasker	match_part	6918	6977	17	+	.	ID=HS04636:hsp:5:1.3.0.0;Parent=HS04636:hit:5:1.3.0.0;Target=species:%2528TATT%2529n|genus:Simple_repeat 1 54 +
HS04636	repeatmasker	match	3840	3847	17	+	.	ID=HS04636:hit:6:1.3.0.0;Name=species:%28ATAC%29n|genus:Simple_repeat;Target=species:%28ATAC%29n|genus:Simple_repeat 3 57 +
HS04636	repeatmasker	match_part	3840	3847	17	+	.	ID=HS04636:hsp:6:1.3.0.0;Parent=HS04636:hit:6:1.3.0.0;Target=species:%2528ATAC%2529n|genus:Simple_repeat 3 57 +
HS04636	repeatmasker	match	9419	9435	16	+	.	ID=HS04636:hit:7:1.3.0.0;Name=species:%28A%29n|genus:Simple_repeat;Target=species:%28A%29n|genus:Simple_repeat 1 17 +
HS04636	repeatmasker	match_part	9419	9435	16	+	.	ID=HS04636:hsp:7:1.3.0.0;Parent=HS04636:hit:7:1.3.0.0;Target=species:%2528A%2529n|genus:Simple_repeat 1 17 +
###
HS04636	blastn	expressed_sequence_match	1815	6903	120	+	.	ID=HS04636:hit:8:3.2.0.0;Name=HS04636.g1
HS04636	blastn	match_part	1815	1934	120	+	.	ID=HS04636:hsp:8:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 129 248 +;Gap=M120
HS04636	blastn	match_part	1815	1845	31	+	.	ID=HS04636:hsp:9:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 50 80 +;Gap=M31
HS04636	blastn	match_part	2055	2198	144	+	.	ID=HS04636:hsp:10:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 249 392 +;Gap=M144
HS04636	blastn	match_part	2852	2997	146	+	.	ID=HS04636:hsp:11:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 393 538 +;Gap=M146
HS04636	blastn	match_part	3424	3609	186	+	.	ID=HS04636:hsp:12:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 535 720 +;Gap=M186
HS04636	blastn	match_part	4339	4423	85	+	.	ID=HS04636:hsp:13:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 718 802 +;Gap=M85
HS04636	blastn	match_part	4541	4790	250	+	.	ID=HS04636:hsp:14:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 801 1050 +;Gap=M250
HS04636	blastn	match_part	5068	5360	293	+	.	ID=HS04636:hsp:15:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 1046 1338 +;Gap=M293
HS04636	blastn	match_part	5859	6008	150	+	.	ID=HS04636:hsp:16:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 1336 1485 +;Gap=M150
HS04636	blastn	match_part	6490	6903	414	+	.	ID=HS04636:hsp:17:3.2.0.0;Parent=HS04636:hit:8:3.2.0.0;Target=HS04636.g1 1481 1894 +;Gap=M414
HS04636	est2genome	expressed_sequence_match	1813	6903	8728	+	.	ID=HS04636:hit:9:3.2.0.0;Name=HS04636.g1
HS04636	est2genome	match_part	1813	1934	8728	+	.	ID=HS04636:hsp:18:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 127 248 +;Gap=M122
HS04636	est2genome	match_part	2055	2198	8728	+	.	ID=HS04636:hsp:19:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 249 392 +;Gap=M144
HS04636	est2genome	match_part	2852	2995	8728	+	.	ID=HS04636:hsp:20:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 393 536 +;Gap=M144
HS04636	est2genome	match_part	3426	3607	8728	+	.	ID=HS04636:hsp:21:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 537 718 +;Gap=M182
HS04636	est2genome	match_part	4340	4423	8728	+	.	ID=HS04636:hsp:22:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 719 802 +;Gap=M84
HS04636	est2genome	match_part	4543	4789	8728	+	.	ID=HS04636:hsp:23:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 803 1049 +;Gap=M247
HS04636	est2genome	match_part	5072	5358	8728	+	.	ID=HS04636:hsp:24:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 1050 1336 +;Gap=M287
HS04636	est2genome	match_part	5860	6007	8728	+	.	ID=HS04636:hsp:25:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 1337 1484 +;Gap=M148
HS04636	est2genome	match_part	6494	6903	8728	+	.	ID=HS04636:hsp:26:3.2.0.0;Parent=HS04636:hit:9:3.2.0.0;Target=HS04636.g1 1485 1894 +;Gap=M410