Mercurial > repos > iuc > maker
changeset 2:d3a2072d8745 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 4141a68e0ce1cf6a24f721dce31b81b56f249088
| author | iuc |
|---|---|
| date | Fri, 03 May 2019 07:50:54 -0400 |
| parents | 73a79dec987b |
| children | 96ac930d84fa |
| files | macros.xml maker.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Sun Jul 01 16:12:18 2018 -0400 +++ b/macros.xml Fri May 03 07:50:54 2019 -0400 @@ -6,7 +6,7 @@ <yield /> </requirements> </xml> - <token name="@VERSION@">2.31.9</token> + <token name="@VERSION@">2.31.10</token> <xml name="citations"> <citations>
--- a/maker.xml Sun Jul 01 16:12:18 2018 -0400 +++ b/maker.xml Fri May 03 07:50:54 2019 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0"?> -<tool id="maker" name="Maker" profile="16.04" version="@VERSION@.1"> +<tool id="maker" name="Maker" profile="16.04" version="@VERSION@"> <description>genome annotation pipeline</description> <macros> <import>macros.xml</import> @@ -18,7 +18,7 @@ && - sed "s/cpus=/cpus=\${GALAXY_SLOTS:-4}/g" '$ctl' > maker_opts.ctl + cp '$ctl' maker_opts.ctl && @@ -35,7 +35,7 @@ export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && #end if - maker maker_opts.ctl maker_bopts.ctl maker_exe.ctl + mpiexec -n \${GALAXY_SLOTS:-4} maker maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null && @@ -192,7 +192,7 @@ #-----External Application Behavior Options alt_peptide=${advanced.alt_peptide} # amino acid used to replace non-standard amino acids in BLAST databases -cpus= # max number of cpus to use in BLAST and RepeatMasker (not for MPI, leave 1 when using MPI) +cpus=1 # max number of cpus to use in BLAST and RepeatMasker (not for MPI, leave 1 when using MPI) #-----MAKER Behavior Options max_dna_len=${advanced.max_dna_len} # length for dividing up contigs into chunks (increases/decreases memory usage)