Mercurial > repos > iuc > maker
changeset 6:d46d803ca6cc draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 6ba137e32243a6de1fb83a7d4b88f9283db5dd01"
| author | iuc |
|---|---|
| date | Tue, 05 Jan 2021 09:00:59 +0000 |
| parents | 5201ec38c01f |
| children | 7bac6f5fcfa2 |
| files | maker.xml readme.rst |
| diffstat | 2 files changed, 10 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/maker.xml Mon Dec 28 23:19:04 2020 +0000 +++ b/maker.xml Tue Jan 05 09:00:59 2021 +0000 @@ -39,9 +39,9 @@ export AUGUSTUS_CONFIG_PATH=`pwd`/augustus_dir/ && #end if - MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}" && - if [ "\$MAKER_NO_MPI" != "1" ]; then - MPI_CMD=""; + MPI_CMD="" && + if [ "\$MAKER_MPI" == "1" ]; then + MPI_CMD="mpiexec -n \${GALAXY_SLOTS:-4}"; fi && \${MPI_CMD} maker --ignore_nfs_tmp maker_opts.ctl maker_bopts.ctl maker_exe.ctl < /dev/null
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Tue Jan 05 09:00:59 2021 +0000 @@ -0,0 +1,7 @@ +Running with MPI +================ + +By default, Maker will only run on 1 cpu. If you want to parallelize on any number +of cpus and nodes, you can enable MPI by setting the ``MAKER_MPI`` variable to 1 +in the job destination, and setting ``GALAXY_SLOTS`` to the desired number of cores +(see https://galaxyproject.org/admin/config/galaxy_slots/#galaxy_slots-for-server-admins).