Mercurial > repos > iuc > maker_map_ids
diff test-data/annot_human.gff3 @ 3:f1912d5575df draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 5bef07276e14b38cca31ef724d0b4d2f55809715"
author | iuc |
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date | Mon, 28 Dec 2020 23:19:28 +0000 |
parents | 060ea7339911 |
children |
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--- a/test-data/annot_human.gff3 Fri May 03 07:50:37 2019 -0400 +++ b/test-data/annot_human.gff3 Mon Dec 28 23:19:28 2020 +0000 @@ -1,44 +1,42 @@ ##gff-version 3 -HS08198 maker gene 352 1848 . + . ID=maker-HS08198-augustus-gene-0.4;Name=maker-HS08198-augustus-gene-0.4 -HS08198 maker mRNA 352 1848 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1;Parent=maker-HS08198-augustus-gene-0.4;Name=maker-HS08198-augustus-gene-0.4-mRNA-1;_AED=0.00;_eAED=0.00;_QI=70|1|1|1|0.83|0.85|7|0|192 -HS08198 maker exon 352 397 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:exon:10;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker exon 421 582 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:exon:11;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker exon 812 894 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:exon:12;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker exon 1053 1123 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:exon:13;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker exon 1208 1315 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:exon:14;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker exon 1587 1688 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:exon:15;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker exon 1772 1848 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:exon:16;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker five_prime_UTR 352 397 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:five_prime_utr;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker five_prime_UTR 421 444 . + . ID=maker-HS08198-augustus-gene-0.4-mRNA-1:five_prime_utr;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker CDS 445 582 . + 0 ID=maker-HS08198-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker CDS 812 894 . + 0 ID=maker-HS08198-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker CDS 1053 1123 . + 1 ID=maker-HS08198-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker CDS 1208 1315 . + 2 ID=maker-HS08198-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker CDS 1587 1688 . + 2 ID=maker-HS08198-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -HS08198 maker CDS 1772 1848 . + 2 ID=maker-HS08198-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.4-mRNA-1 -### +HS08198 maker gene 352 1848 . + . ID=maker-HS08198-augustus-gene-0.1;Name=maker-HS08198-augustus-gene-0.1 +HS08198 maker mRNA 352 1848 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1;Parent=maker-HS08198-augustus-gene-0.1;Name=maker-HS08198-augustus-gene-0.1-mRNA-1;_AED=0.00;_eAED=0.00;_QI=70|1|1|1|0.83|0.85|7|0|192 +HS08198 maker exon 352 397 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:exon:10;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker exon 421 582 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:exon:11;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker exon 812 894 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:exon:12;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker exon 1053 1123 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:exon:13;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker exon 1208 1315 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:exon:14;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker exon 1587 1688 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:exon:15;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker exon 1772 1848 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:exon:16;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker five_prime_UTR 352 397 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:five_prime_utr;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker five_prime_UTR 421 444 . + . ID=maker-HS08198-augustus-gene-0.1-mRNA-1:five_prime_utr;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker CDS 445 582 . + 0 ID=maker-HS08198-augustus-gene-0.1-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker CDS 812 894 . + 0 ID=maker-HS08198-augustus-gene-0.1-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker CDS 1053 1123 . + 1 ID=maker-HS08198-augustus-gene-0.1-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker CDS 1208 1315 . + 2 ID=maker-HS08198-augustus-gene-0.1-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker CDS 1587 1688 . + 2 ID=maker-HS08198-augustus-gene-0.1-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 +HS08198 maker CDS 1772 1848 . + 2 ID=maker-HS08198-augustus-gene-0.1-mRNA-1:cds;Parent=maker-HS08198-augustus-gene-0.1-mRNA-1 ### -HS04636 maker gene 966 6903 . + . ID=maker-HS04636-augustus-gene-0.4;Name=maker-HS04636-augustus-gene-0.4 -HS04636 maker mRNA 966 6903 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1;Parent=maker-HS04636-augustus-gene-0.4;Name=maker-HS04636-augustus-gene-0.4-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.88|0.8|0.9|1|1|10|0|604 -HS04636 maker exon 966 1017 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:0;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 1818 1934 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:1;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 2055 2198 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:2;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 2852 2995 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:3;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 3426 3607 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:4;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 4340 4423 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:5;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 4543 4789 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:6;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 5072 5358 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:7;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 5860 6007 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:8;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker exon 6494 6903 . + . ID=maker-HS04636-augustus-gene-0.4-mRNA-1:exon:9;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 966 1017 . + 0 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 1818 1934 . + 2 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 2055 2198 . + 2 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 2852 2995 . + 2 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 3426 3607 . + 2 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 4340 4423 . + 0 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 4543 4789 . + 0 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 5072 5358 . + 2 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 5860 6007 . + 0 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 -HS04636 maker CDS 6494 6903 . + 2 ID=maker-HS04636-augustus-gene-0.4-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.4-mRNA-1 +HS04636 maker gene 966 6903 . + . ID=maker-HS04636-augustus-gene-0.3;Name=maker-HS04636-augustus-gene-0.3 +HS04636 maker mRNA 966 6903 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1;Parent=maker-HS04636-augustus-gene-0.3;Name=maker-HS04636-augustus-gene-0.3-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.88|0.8|0.9|1|1|10|0|604 +HS04636 maker exon 966 1017 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:0;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 1818 1934 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:1;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 2055 2198 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:2;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 2852 2995 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:3;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 3426 3607 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:4;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 4340 4423 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:5;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 4543 4789 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:6;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 5072 5358 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:7;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 5860 6007 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:8;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker exon 6494 6903 . + . ID=maker-HS04636-augustus-gene-0.3-mRNA-1:exon:9;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 966 1017 . + 0 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 1818 1934 . + 2 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 2055 2198 . + 2 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 2852 2995 . + 2 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 3426 3607 . + 2 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 4340 4423 . + 0 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 4543 4789 . + 0 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 5072 5358 . + 2 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 5860 6007 . + 0 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 +HS04636 maker CDS 6494 6903 . + 2 ID=maker-HS04636-augustus-gene-0.3-mRNA-1:cds;Parent=maker-HS04636-augustus-gene-0.3-mRNA-1 ### -###