Mercurial > repos > iuc > maker_map_ids
diff test-data/evidences_model.gff3 @ 3:f1912d5575df draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maker commit 5bef07276e14b38cca31ef724d0b4d2f55809715"
author | iuc |
---|---|
date | Mon, 28 Dec 2020 23:19:28 +0000 |
parents | 060ea7339911 |
children |
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--- a/test-data/evidences_model.gff3 Fri May 03 07:50:37 2019 -0400 +++ b/test-data/evidences_model.gff3 Mon Dec 28 23:19:28 2020 +0000 @@ -1,23 +1,51 @@ ##gff-version 3 HS08198 . contig 1 2344 . . . ID=HS08198;Name=HS08198 +HS08198 snap match 99 1848 233.121 + . ID=HS08198:hit:6:4.5.0.0;Name=snap-HS08198-abinit-gene-0.0-mRNA-1 +HS08198 snap match_part 99 107 -2.800 + . ID=HS08198:hsp:51:4.5.0.0;Parent=HS08198:hit:6:4.5.0.0;Target=snap-HS08198-abinit-gene-0.0-mRNA-1 1 9 +;Gap=M9 +HS08198 snap match_part 421 582 45.298 + . ID=HS08198:hsp:52:4.5.0.0;Parent=HS08198:hit:6:4.5.0.0;Target=snap-HS08198-abinit-gene-0.0-mRNA-1 10 171 +;Gap=M162 +HS08198 snap match_part 812 874 24.711 + . ID=HS08198:hsp:53:4.5.0.0;Parent=HS08198:hit:6:4.5.0.0;Target=snap-HS08198-abinit-gene-0.0-mRNA-1 172 234 +;Gap=M63 +HS08198 snap match_part 1024 1123 34.281 + . ID=HS08198:hsp:54:4.5.0.0;Parent=HS08198:hit:6:4.5.0.0;Target=snap-HS08198-abinit-gene-0.0-mRNA-1 235 334 +;Gap=M100 +HS08198 snap match_part 1208 1315 53.852 + . ID=HS08198:hsp:55:4.5.0.0;Parent=HS08198:hit:6:4.5.0.0;Target=snap-HS08198-abinit-gene-0.0-mRNA-1 335 442 +;Gap=M108 +HS08198 snap match_part 1587 1688 41.983 + . ID=HS08198:hsp:56:4.5.0.0;Parent=HS08198:hit:6:4.5.0.0;Target=snap-HS08198-abinit-gene-0.0-mRNA-1 443 544 +;Gap=M102 +HS08198 snap match_part 1772 1848 35.796 + . ID=HS08198:hsp:57:4.5.0.0;Parent=HS08198:hit:6:4.5.0.0;Target=snap-HS08198-abinit-gene-0.0-mRNA-1 545 621 +;Gap=M77 ### -HS08198 blastn expressed_sequence_match 444 1848 140 + . ID=HS08198:hit:2:3.2.0.0;Name=HS08198.g2 -HS08198 blastn match_part 444 583 140 + . ID=HS08198:hsp:19:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 79 218 +;Gap=M140 -HS08198 blastn match_part 445 523 79 + . ID=HS08198:hsp:20:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 1 79 +;Gap=M79 -HS08198 blastn match_part 808 895 88 + . ID=HS08198:hsp:21:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 214 301 +;Gap=M88 -HS08198 blastn match_part 1053 1123 71 + . ID=HS08198:hsp:22:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 -HS08198 blastn match_part 1206 1315 110 + . ID=HS08198:hsp:23:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 370 479 +;Gap=M110 -HS08198 blastn match_part 1586 1689 104 + . ID=HS08198:hsp:24:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 479 582 +;Gap=M104 -HS08198 blastn match_part 1771 1848 78 + . ID=HS08198:hsp:25:3.2.0.0;Parent=HS08198:hit:2:3.2.0.0;Target=HS08198.g2 581 658 +;Gap=M78 -HS08198 est2genome expressed_sequence_match 352 1848 2869 + . ID=HS08198:hit:3:3.2.0.0;Name=HS08198.g2 -HS08198 est2genome match_part 352 397 2869 + . ID=HS08198:hsp:26:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 3 52 +;Gap=M18 D1 M2 I4 M10 I1 M15 -HS08198 est2genome match_part 421 582 2869 + . ID=HS08198:hsp:27:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 53 217 +;Gap=M4 I2 M3 I3 M5 D1 M9 D1 M139 -HS08198 est2genome match_part 812 894 2869 + . ID=HS08198:hsp:28:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 218 300 +;Gap=M83 -HS08198 est2genome match_part 1053 1123 2869 + . ID=HS08198:hsp:29:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 -HS08198 est2genome match_part 1208 1315 2869 + . ID=HS08198:hsp:30:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 372 479 +;Gap=M108 -HS08198 est2genome match_part 1587 1688 2869 + . ID=HS08198:hsp:31:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 480 581 +;Gap=M102 -HS08198 est2genome match_part 1772 1848 2869 + . ID=HS08198:hsp:32:3.2.0.0;Parent=HS08198:hit:3:3.2.0.0;Target=HS08198.g2 582 658 +;Gap=M77 +HS08198 blastn expressed_sequence_match 444 1848 140 + . ID=HS08198:hit:4:3.2.0.0;Name=HS08198.g2 +HS08198 blastn match_part 444 583 140 + . ID=HS08198:hsp:37:3.2.0.0;Parent=HS08198:hit:4:3.2.0.0;Target=HS08198.g2 79 218 +;Gap=M140 +HS08198 blastn match_part 445 523 79 + . ID=HS08198:hsp:38:3.2.0.0;Parent=HS08198:hit:4:3.2.0.0;Target=HS08198.g2 1 79 +;Gap=M79 +HS08198 blastn match_part 808 895 88 + . ID=HS08198:hsp:39:3.2.0.0;Parent=HS08198:hit:4:3.2.0.0;Target=HS08198.g2 214 301 +;Gap=M88 +HS08198 blastn match_part 1053 1123 71 + . ID=HS08198:hsp:40:3.2.0.0;Parent=HS08198:hit:4:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 +HS08198 blastn match_part 1206 1315 110 + . ID=HS08198:hsp:41:3.2.0.0;Parent=HS08198:hit:4:3.2.0.0;Target=HS08198.g2 370 479 +;Gap=M110 +HS08198 blastn match_part 1586 1689 104 + . ID=HS08198:hsp:42:3.2.0.0;Parent=HS08198:hit:4:3.2.0.0;Target=HS08198.g2 479 582 +;Gap=M104 +HS08198 blastn match_part 1771 1848 78 + . ID=HS08198:hsp:43:3.2.0.0;Parent=HS08198:hit:4:3.2.0.0;Target=HS08198.g2 581 658 +;Gap=M78 +HS08198 est2genome expressed_sequence_match 352 1848 2869 + . ID=HS08198:hit:5:3.2.0.0;Name=HS08198.g2 +HS08198 est2genome match_part 352 397 2869 + . ID=HS08198:hsp:44:3.2.0.0;Parent=HS08198:hit:5:3.2.0.0;Target=HS08198.g2 3 52 +;Gap=M18 D1 M2 I4 M10 I1 M15 +HS08198 est2genome match_part 421 582 2869 + . ID=HS08198:hsp:45:3.2.0.0;Parent=HS08198:hit:5:3.2.0.0;Target=HS08198.g2 53 217 +;Gap=M4 I2 M3 I3 M5 D1 M9 D1 M139 +HS08198 est2genome match_part 812 894 2869 + . ID=HS08198:hsp:46:3.2.0.0;Parent=HS08198:hit:5:3.2.0.0;Target=HS08198.g2 218 300 +;Gap=M83 +HS08198 est2genome match_part 1053 1123 2869 + . ID=HS08198:hsp:47:3.2.0.0;Parent=HS08198:hit:5:3.2.0.0;Target=HS08198.g2 301 371 +;Gap=M71 +HS08198 est2genome match_part 1208 1315 2869 + . ID=HS08198:hsp:48:3.2.0.0;Parent=HS08198:hit:5:3.2.0.0;Target=HS08198.g2 372 479 +;Gap=M108 +HS08198 est2genome match_part 1587 1688 2869 + . ID=HS08198:hsp:49:3.2.0.0;Parent=HS08198:hit:5:3.2.0.0;Target=HS08198.g2 480 581 +;Gap=M102 +HS08198 est2genome match_part 1772 1848 2869 + . ID=HS08198:hsp:50:3.2.0.0;Parent=HS08198:hit:5:3.2.0.0;Target=HS08198.g2 582 658 +;Gap=M77 HS04636 . contig 1 9453 . . . ID=HS04636;Name=HS04636 +HS04636 snap match 1862 6903 761.916 + . ID=HS04636:hit:2:4.5.0.0;Name=snap-HS04636-abinit-gene-0.2-mRNA-1 +HS04636 snap match_part 1862 1867 8.523 + . ID=HS04636:hsp:19:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 1 6 +;Gap=M6 +HS04636 snap match_part 1883 1934 20.348 + . ID=HS04636:hsp:20:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 7 58 +;Gap=M52 +HS04636 snap match_part 2055 2198 69.846 + . ID=HS04636:hsp:21:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 59 202 +;Gap=M144 +HS04636 snap match_part 2852 2995 67.055 + . ID=HS04636:hsp:22:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 203 346 +;Gap=M144 +HS04636 snap match_part 3426 3607 77.942 + . ID=HS04636:hsp:23:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 347 528 +;Gap=M182 +HS04636 snap match_part 4340 4423 47.588 + . ID=HS04636:hsp:24:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 529 612 +;Gap=M84 +HS04636 snap match_part 4543 4789 112.472 + . ID=HS04636:hsp:25:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 613 859 +;Gap=M247 +HS04636 snap match_part 5072 5358 122.974 + . ID=HS04636:hsp:26:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 860 1146 +;Gap=M287 +HS04636 snap match_part 5860 6007 72.046 + . ID=HS04636:hsp:27:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 1147 1294 +;Gap=M148 +HS04636 snap match_part 6494 6903 163.122 + . ID=HS04636:hsp:28:4.5.0.0;Parent=HS04636:hit:2:4.5.0.0;Target=snap-HS04636-abinit-gene-0.2-mRNA-1 1295 1704 +;Gap=M410 +HS04636 augustus match 966 6903 0.1 + . ID=HS04636:hit:3:4.5.0.0;Name=augustus-HS04636-abinit-gene-0.3-mRNA-1 +HS04636 augustus match_part 966 1017 0.1 + . ID=HS04636:hsp:29:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 1 52 +;Gap=M52 +HS04636 augustus match_part 2852 2995 0.1 + . ID=HS04636:hsp:30:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 53 196 +;Gap=M144 +HS04636 augustus match_part 3426 3607 0.1 + . ID=HS04636:hsp:31:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 197 378 +;Gap=M182 +HS04636 augustus match_part 4340 4423 0.1 + . ID=HS04636:hsp:32:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 379 462 +;Gap=M84 +HS04636 augustus match_part 4543 4789 0.1 + . ID=HS04636:hsp:33:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 463 709 +;Gap=M247 +HS04636 augustus match_part 5072 5358 0.1 + . ID=HS04636:hsp:34:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 710 996 +;Gap=M287 +HS04636 augustus match_part 5860 6007 0.1 + . ID=HS04636:hsp:35:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 997 1144 +;Gap=M148 +HS04636 augustus match_part 6494 6903 0.1 + . ID=HS04636:hsp:36:4.5.0.0;Parent=HS04636:hit:3:4.5.0.0;Target=augustus-HS04636-abinit-gene-0.3-mRNA-1 1145 1554 +;Gap=M410 ### HS04636 blastn expressed_sequence_match 1815 6903 120 + . ID=HS04636:hit:0:3.2.0.0;Name=HS04636.g1 HS04636 blastn match_part 1815 1934 120 + . ID=HS04636:hsp:0:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 129 248 +;Gap=M120 @@ -26,7 +54,7 @@ HS04636 blastn match_part 2852 2997 146 + . ID=HS04636:hsp:3:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 393 538 +;Gap=M146 HS04636 blastn match_part 3424 3609 186 + . ID=HS04636:hsp:4:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 535 720 +;Gap=M186 HS04636 blastn match_part 4339 4423 85 + . ID=HS04636:hsp:5:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 718 802 +;Gap=M85 -HS04636 blastn match_part 4541 4790 250 + . ID=HS04636:hsp:6:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 801 1050 +;Gap=M250 +HS04636 blastn match_part 4542 4790 249 + . ID=HS04636:hsp:6:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 802 1050 +;Gap=M249 HS04636 blastn match_part 5068 5360 293 + . ID=HS04636:hsp:7:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 1046 1338 +;Gap=M293 HS04636 blastn match_part 5859 6008 150 + . ID=HS04636:hsp:8:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 1336 1485 +;Gap=M150 HS04636 blastn match_part 6490 6903 414 + . ID=HS04636:hsp:9:3.2.0.0;Parent=HS04636:hit:0:3.2.0.0;Target=HS04636.g1 1481 1894 +;Gap=M414