Mercurial > repos > iuc > mash
annotate mash_screen.xml @ 1:402b67d1af7d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
author | iuc |
---|---|
date | Wed, 23 Jan 2019 15:59:25 -0500 |
parents | bac720dc1948 |
children | 7f7d8b0c8517 |
rev | line source |
---|---|
1
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
1 <tool id="mash_screen" name="mash screen" version="@TOOL_VERSION@+galaxy1" profile="19.01"> |
0
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
2 <description>determines how well query sequences are contained within a pool of sequences.</description> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
3 <macros> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
4 <import>macros.xml</import> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
5 </macros> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
6 <requirements> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
7 <requirement type="package" version="@TOOL_VERSION@">mash</requirement> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
8 </requirements> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
9 <version_command>mash --version</version_command> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
10 <command detect_errors="exit_code"><![CDATA[ |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
11 ln -s '$queries' queries.msh && |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
12 mash screen |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
13 $winner_takes_all |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
14 -i $minimum_identity_to_report |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
15 -v $maximum_p_value_to_report |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
16 queries.msh |
1
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
17 #if str( $pool_input.pool_input_selector ) == "paired" |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
18 '$pool_input.pool_1' '$pool_input.pool_2' |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
19 #end if |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
20 #if str( $pool_input.pool_input_selector ) == "paired_collection" |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
21 '$pool_input.pool.forward' '$pool_input.pool.reverse' |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
22 #end if |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
23 #if str( $pool_input.pool_input_selector ) == "single" |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
24 '$pool_input.pool' |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
25 #end if |
0
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
26 > '$output' |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
27 ]]></command> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
28 <inputs> |
1
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
29 <conditional name="pool_input"> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
30 <param name="pool_input_selector" type="select" label="Single or Paired-end reads" help="Select between paired and single end data"> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
31 <option value="paired">Paired</option> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
32 <option value="single">Single</option> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
33 <option value="paired_collection">Paired Collection</option> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
34 </param> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
35 <when value="paired"> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
36 <param name="pool_1" type="data" format="@INTYPES@" label="Select first set of reads" help="Specify dataset with forward reads"/> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
37 <param name="pool_2" type="data" format="@INTYPES@" label="Select second set of reads" help="Specify dataset with reverse reads"/> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
38 </when> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
39 <when value="single"> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
40 <param name="pool" type="data" format="@INTYPES@" label="Select fastq dataset" help="Specify dataset with single reads"/> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
41 </when> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
42 <when value="paired_collection"> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
43 <param name="pool" format="@INTYPES@" type="data_collection" collection_type="paired" label="Select a paired collection" help="See help section for an explanation of dataset collections"/> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
44 </when> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
45 </conditional> |
0
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
46 <param name="queries" type="data" format="msh" /> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
47 <param type="boolean" name="winner_takes_all" argument="-w" truevalue="-w" falsevalue=""/> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
48 <param type="float" name="minimum_identity_to_report" argument="-i" value="0." min="-1." max="1." /> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
49 <param type="float" name="maximum_p_value_to_report" argument="-v" value="1." min="0." max="1."/> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
50 </inputs> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
51 <outputs> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
52 <data name="output" format="tabular" /> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
53 </outputs> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
54 <tests> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
55 <test> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
56 <param name="queries" value="NZ_MYON01000010.1.msh"/> |
1
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
57 <param name="pool_input_selector" value="single"/> |
0
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
58 <param name="pool" value="ERR024951_seqtk_sample_1000_1.fastq"/> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
59 <output name="output" file="mash_screen_NZ_MYON01000010.1_ERR024951_seqtk_sample_1000_1.tsv"/> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
60 </test> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
61 <test> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
62 <param name="queries" value="NZ_MYON01000010.1.msh"/> |
1
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
63 <param name="pool_input_selector" value="single"/> |
0
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
64 <param name="pool" value="ERR024951_seqtk_sample_1000_2.fastq"/> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
65 <output name="output" file="mash_screen_NZ_MYON01000010.1_ERR024951_seqtk_sample_1000_2.tsv"/> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
66 </test> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
67 <test> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
68 <param name="queries" value="NZ_MYON01000010.1.msh"/> |
1
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
69 <param name="pool_input_selector" value="paired"/> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
70 <param name="pool_1" value="ERR024951_seqtk_sample_1000_1.fastq"/> |
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
71 <param name="pool_2" value="ERR024951_seqtk_sample_1000_2.fastq"/> |
0
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
72 <output name="output" file="mash_screen_NZ_MYON01000010.1_ERR024951_seqtk_sample_1000_1and2.tsv"/> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
73 </test> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
74 </tests> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
75 <help><![CDATA[ |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
76 Description: |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
77 |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
78 Determine how well query sequences are contained within a pool of sequences. |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
79 The queries must be formatted as a single Mash sketch file (.msh), created |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
80 with the `mash sketch` command. The <pool> files can be contigs or reads, in |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
81 fasta or fastq, gzipped or not, and "-" can be given for <pool> to read from |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
82 standard input. The <pool> sequences are assumed to be nucleotides, and will |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
83 be 6-frame translated if the <queries> are amino acids. The output fields are |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
84 [identity, shared-hashes, median-multiplicity, p-value, query-ID, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
85 query-comment], where median-multiplicity is computed for shared hashes, based |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
86 on the number of observations of those hashes within the pool. |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
87 ]]></help> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
88 <citations> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
89 <citation type="bibtex"> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
90 @article{ondov2016mash, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
91 title={Mash: fast genome and metagenome distance estimation using MinHash}, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
92 author={Ondov, Brian D and Treangen, Todd J and Melsted, P{\'a}ll and Mallonee, Adam B and Bergman, Nicholas H and Koren, Sergey and Phillippy, Adam M}, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
93 journal={Genome biology}, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
94 volume={17}, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
95 number={1}, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
96 pages={132}, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
97 year={2016}, |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
98 publisher={BioMed Central} |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
99 } |
1
402b67d1af7d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 91435d801528addac840722e9a0092b2d342b8bb
iuc
parents:
0
diff
changeset
|
100 </citation> |
0
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
101 </citations> |
bac720dc1948
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mash commit 500478e8adcabf5249941012f78fe2140ecc7264
iuc
parents:
diff
changeset
|
102 </tool> |