comparison masigpro.xml @ 4:402e0b9cfd87 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/masigpro commit 7dc16d5d4169a8fbfb3fad3b2212fd8b6d481f5f"

3:83f8b5ceff43

<tool id="masigpro" name="maSigPro" version="1.49.3.1+galaxy1">
    <description>Significant Gene Expression Profile Differences in Time Course Gene Expression Data</description>
    <requirements>
        <requirement type="package" version="8.25">coreutils</requirement>
        <requirement type="package" version="1.49.3">bioconductor-masigpro</requirement>
        <requirement type="package" version="1.3.2">r-optparse</requirement>
        <requirement type="package" version="4.4">sed</requirement>
    </requirements>
    <stdio>
        <regex match="Execution halted"

            </repeat>
            <repeat name="rep_time">
                <param name="time" value="3" />
                <param name="files" value="control_3H.counts,treat_3H_1.counts,treat_3H_2.counts" />
            </repeat>
            <param name="replicates_selector" value="advanced" />
            <repeat name="rep_repl">
                <param name="files" value="treat_3H_1.counts,treat_3H_2.counts" />
            </repeat>
            <repeat name="rep_groups">
                <param name="name" value="Control" />

4:402e0b9cfd87

<!-- TODO remove .1 in tool version with next update -->
<tool id="masigpro" name="maSigPro" version="@TOOL_VERSION@.1+galaxy@VERSION_SUFFIX@">
    <description>Significant Gene Expression Profile Differences in Time Course Gene Expression Data</description>
    <macros>
        <token name="@TOOL_VERSION@">1.49.3</token>
        <token name="@VERSION_SUFFIX@">0</token>
    </macros>        
    <xrefs>
        <xref type="bio.tools">masigpro</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="8.25">coreutils</requirement>
        <requirement type="package" version="@TOOL_VERSION@">bioconductor-masigpro</requirement>
        <requirement type="package" version="1.3.2">r-optparse</requirement>
        <requirement type="package" version="4.4">sed</requirement>
    </requirements>
    <stdio>
        <regex match="Execution halted"

            </repeat>
            <repeat name="rep_time">
                <param name="time" value="3" />
                <param name="files" value="control_3H.counts,treat_3H_1.counts,treat_3H_2.counts" />
            </repeat>
            <repeat name="rep_repl">
                <param name="files" value="treat_3H_1.counts,treat_3H_2.counts" />
            </repeat>
            <repeat name="rep_groups">
                <param name="name" value="Control" />