Mercurial > repos > iuc > medaka_consensus_pipeline

annotate test-data/annotate_vcf_test.vcf @ 10:1ca4ce7241fd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 0faf0ade3f13d7c78d93869823ea9fdf25c21b13"
author iuc
date Thu, 22 Apr 2021 20:25:13 +0000
parents 35666d44fe7a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.1
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
2 ##medaka_version=1.0.3
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
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3 ##contig=<ID=NC_045512.2>
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
4 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype.">
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
5 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score">
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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6 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
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7 NC_045512.2 45 . G C 46.359 PASS GT:GQ 1:46
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
8 NC_045512.2 685 . AAAGTCATTT A 260.487 PASS GT:GQ 1:260
35666d44fe7a "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
9 NC_045512.2 1813 . TA T 11.034 PASS GT:GQ 1:11