Mercurial > repos > iuc > medaka_consensus_pipeline
comparison medaka_consensus.xml @ 15:79e9a869f40e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 4d3dfd4bcb567178107dcfd808ff03f9fec0bdbd
| author | iuc |
|---|---|
| date | Wed, 12 Oct 2022 07:44:40 +0000 |
| parents | cb34f00cc10f |
| children |
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| 14:cb34f00cc10f | 15:79e9a869f40e |
|---|---|
| 65 <has_text_matching expression=".+GTCAGAATCGCGTTCAGCGCGTTTCAGCGGTGCGTACAATT.+"/> | 65 <has_text_matching expression=".+GTCAGAATCGCGTTCAGCGCGTTTCAGCGGTGCGTACAATT.+"/> |
| 66 </assert_contents> | 66 </assert_contents> |
| 67 </output> | 67 </output> |
| 68 <output name="out_probs"> | 68 <output name="out_probs"> |
| 69 <assert_contents> | 69 <assert_contents> |
| 70 <has_size value="165503" delta="100"/> | 70 <has_size value="169146" delta="100"/> |
| 71 </assert_contents> | 71 </assert_contents> |
| 72 </output> | 72 </output> |
| 73 <output name="out_calls"> | 73 <output name="out_calls"> |
| 74 <assert_contents> | 74 <assert_contents> |
| 75 <has_size value="343341" delta="100"/> | 75 <has_size value="351188" delta="100"/> |
| 76 </assert_contents> | 76 </assert_contents> |
| 77 </output> | 77 </output> |
| 78 </test> | 78 </test> |
| 79 <!-- #2 --> | 79 <!-- #2 --> |
| 80 <test expect_num_outputs="5"> | 80 <test expect_num_outputs="5"> |
| 89 <has_line line=">4"/> <!-- Replace test --> | 89 <has_line line=">4"/> <!-- Replace test --> |
| 90 </assert_contents> | 90 </assert_contents> |
| 91 </output> | 91 </output> |
| 92 <output name="out_probs"> | 92 <output name="out_probs"> |
| 93 <assert_contents> | 93 <assert_contents> |
| 94 <has_size value="166251" delta="100"/> | 94 <has_size value="169863" delta="100"/> |
| 95 </assert_contents> | 95 </assert_contents> |
| 96 </output> | 96 </output> |
| 97 <output name="out_calls"> | 97 <output name="out_calls"> |
| 98 <assert_contents> | 98 <assert_contents> |
| 99 <has_size value="343340" delta="100"/> | 99 <has_size value="351188" delta="100"/> |
| 100 </assert_contents> | 100 </assert_contents> |
| 101 </output> | 101 </output> |
| 102 <output name="out_log"> | 102 <output name="out_log"> |
| 103 <assert_contents> | 103 <assert_contents> |
| 104 <has_line line="Polished assembly written to results/consensus.fasta, have a nice day."/> | 104 <has_line line="Polished assembly written to results/consensus.fasta, have a nice day."/> |