Mercurial > repos > iuc > medaka_variant

annotate test-data/annotate_vcf_test.vcf @ 3:e86fcef8ed91 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
author iuc
date Tue, 01 Sep 2020 03:08:24 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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diff changeset
1 ##fileformat=VCFv4.1
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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diff changeset
2 ##medaka_version=1.0.3
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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3 ##contig=<ID=NC_045512.2>
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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diff changeset
4 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype.">
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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diff changeset
5 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score">
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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6 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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7 NC_045512.2 45 . G C 46.359 PASS GT:GQ 1:46
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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diff changeset
8 NC_045512.2 685 . AAAGTCATTT A 260.487 PASS GT:GQ 1:260
e86fcef8ed91 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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diff changeset
9 NC_045512.2 1813 . TA T 11.034 PASS GT:GQ 1:11