Mercurial > repos > iuc > medaka_variant
comparison convert_VCF_info_fields.py @ 8:edf6d4003fad draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e0684fe95538cf97b1199ad1072d3da6d1619443"
| author | iuc |
|---|---|
| date | Tue, 23 Feb 2021 20:13:39 +0000 |
| parents | 28c13c42de01 |
| children | 9fb055604648 |
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| 7:28c13c42de01 | 8:edf6d4003fad |
|---|---|
| 84 info.append("DPSPS=%d,%d" % (dpspf, dpspr)) | 84 info.append("DPSPS=%d,%d" % (dpspf, dpspr)) |
| 85 | 85 |
| 86 if dpsp == 0: | 86 if dpsp == 0: |
| 87 info.append("AF=NaN") | 87 info.append("AF=NaN") |
| 88 else: | 88 else: |
| 89 af = dp4[2] + dp4[3] / dpsp | 89 af = (dp4[2] + dp4[3]) / dpsp |
| 90 info.append("AF=%.6f" % (af)) | 90 info.append("AF=%.6f" % (af)) |
| 91 if dpspf == 0: | 91 if dpspf == 0: |
| 92 info.append("FAF=NaN") | 92 info.append("FAF=NaN") |
| 93 else: | 93 else: |
| 94 faf = dp4[2] / dpspf | 94 faf = dp4[2] / dpspf |