Mercurial > repos > iuc > medaka_variant

changeset 8:edf6d4003fad draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e0684fe95538cf97b1199ad1072d3da6d1619443"
author iuc
date Tue, 23 Feb 2021 20:13:39 +0000
parents 28c13c42de01
children 43815fa60f3a
files convert_VCF_info_fields.py variant.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/convert_VCF_info_fields.py	Mon Feb 22 19:59:00 2021 +0000
+++ b/convert_VCF_info_fields.py	Tue Feb 23 20:13:39 2021 +0000
@@ -86,7 +86,7 @@
                     if dpsp == 0:
                         info.append("AF=NaN")
                     else:
-                        af = dp4[2] + dp4[3] / dpsp
+                        af = (dp4[2] + dp4[3]) / dpsp
                         info.append("AF=%.6f" % (af))
                     if dpspf == 0:
                         info.append("FAF=NaN")
--- a/variant.xml	Mon Feb 22 19:59:00 2021 +0000
+++ b/variant.xml	Tue Feb 23 20:13:39 2021 +0000
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="medaka_variant" name="medaka variant tool" version="@TOOL_VERSION@+galaxy5" profile="@PROFILE@">
+<tool id="medaka_variant" name="medaka variant tool" version="@TOOL_VERSION@+galaxy6" profile="@PROFILE@">
     <description>Probability decoding</description>
     <macros>
         <import>macros.xml</import>