Mercurial > repos > iuc > medaka_variant_pipeline
comparison macros.xml @ 10:7623e5888be9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit 0faf0ade3f13d7c78d93869823ea9fdf25c21b13"
| author | iuc |
|---|---|
| date | Thu, 22 Apr 2021 20:24:49 +0000 |
| parents | 336b3def9b2b |
| children | 11fedf536104 |
comparison
equal
deleted
inserted
replaced
| 9:336b3def9b2b | 10:7623e5888be9 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <token name="@TOOL_VERSION@">1.0.3</token> | 3 <token name="@TOOL_VERSION@">1.3.2</token> |
| 4 <token name="@PROFILE@">18.01</token> | 4 <token name="@PROFILE@">20.01</token> |
| 5 <xml name="requirements"> | 5 <xml name="requirements"> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="@TOOL_VERSION@">medaka</requirement> | 7 <requirement type="package" version="@TOOL_VERSION@">medaka</requirement> |
| 8 <yield /> | 8 <yield /> |
| 9 </requirements> | 9 </requirements> |
| 46 <xml name="b" token_argument="-b"> | 46 <xml name="b" token_argument="-b"> |
| 47 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/> | 47 <param argument="@ARGUMENT@" type="integer" value="100" min="1" label="Set inference batch size"/> |
| 48 </xml> | 48 </xml> |
| 49 <xml name="model" token_argument="-m" token_label="Select model"> | 49 <xml name="model" token_argument="-m" token_label="Select model"> |
| 50 <param argument="@ARGUMENT@" type="select" label="@LABEL@"> | 50 <param argument="@ARGUMENT@" type="select" label="@LABEL@"> |
| 51 <option value="r10_min_high_g303">r10_min_high_g303</option> | |
| 52 <option value="r10_min_high_g340">r10_min_high_g340</option> | |
| 53 <option value="r103_min_high_g345">r103_min_high_g345</option> | 51 <option value="r103_min_high_g345">r103_min_high_g345</option> |
| 54 <option value="r103_min_high_g360">r103_min_high_g360</option> | 52 <option value="r103_min_high_g360">r103_min_high_g360</option> |
| 55 <option value="r103_prom_high_g360">r103_prom_high_g360</option> | 53 <option value="r103_prom_high_g360">r103_prom_high_g360</option> |
| 56 <option value="r103_prom_snp_g3210">r103_prom_snp_g3210</option> | 54 <option value="r103_prom_snp_g3210">r103_prom_snp_g3210</option> |
| 57 <option value="r103_prom_variant_g3210">r103_prom_variant_g3210</option> | 55 <option value="r103_prom_variant_g3210">r103_prom_variant_g3210</option> |
| 56 <option value="r10_min_high_g303">r10_min_high_g303</option> | |
| 57 <option value="r10_min_high_g340">r10_min_high_g340</option> | |
| 58 <option value="r941_min_fast_g303">r941_min_fast_g303</option> | 58 <option value="r941_min_fast_g303">r941_min_fast_g303</option> |
| 59 <option value="r941_min_high_g303">r941_min_high_g303</option> | 59 <option value="r941_min_high_g303">r941_min_high_g303</option> |
| 60 <option value="r941_min_high_g330">r941_min_high_g330</option> | 60 <option value="r941_min_high_g330">r941_min_high_g330</option> |
| 61 <option value="r941_min_high_g340_rle">r941_min_high_g340_rle</option> | 61 <option value="r941_min_high_g340_rle">r941_min_high_g340_rle</option> |
| 62 <option value="r941_min_high_g344">r941_min_high_g344</option> | 62 <option value="r941_min_high_g344">r941_min_high_g344</option> |
| 63 <option value="r941_min_high_g351">r941_min_high_g351</option> | 63 <option value="r941_min_high_g351">r941_min_high_g351</option> |
| 64 <option value="r941_min_high_g360">r941_min_high_g360</option> | 64 <option value="r941_min_high_g360" selected="true">r941_min_high_g360</option> |
| 65 <option value="r941_prom_fast_g303">r941_prom_fast_g303</option> | 65 <option value="r941_prom_fast_g303">r941_prom_fast_g303</option> |
| 66 <option value="r941_prom_high_g303">r941_prom_high_g303</option> | 66 <option value="r941_prom_high_g303">r941_prom_high_g303</option> |
| 67 <option value="r941_prom_high_g330">r941_prom_high_g330</option> | 67 <option value="r941_prom_high_g330">r941_prom_high_g330</option> |
| 68 <option value="r941_prom_high_g344">r941_prom_high_g344</option> | 68 <option value="r941_prom_high_g344">r941_prom_high_g344</option> |
| 69 <option value="r941_prom_high_g360" selected="true">r941_prom_high_g360</option> | 69 <option value="r941_prom_high_g360">r941_prom_high_g360</option> |
| 70 <option value="r941_prom_high_g4011">r941_prom_high_g4011</option> | |
| 70 <option value="r941_prom_snp_g303">r941_prom_snp_g303</option> | 71 <option value="r941_prom_snp_g303">r941_prom_snp_g303</option> |
| 71 <option value="r941_prom_snp_g322">r941_prom_snp_g322</option> | 72 <option value="r941_prom_snp_g322">r941_prom_snp_g322</option> |
| 73 <option value="r941_prom_snp_g360">r941_prom_snp_g360</option> | |
| 72 <option value="r941_prom_variant_g303">r941_prom_variant_g303</option> | 74 <option value="r941_prom_variant_g303">r941_prom_variant_g303</option> |
| 73 <option value="r941_prom_variant_g322">r941_prom_variant_g322</option> | 75 <option value="r941_prom_variant_g322">r941_prom_variant_g322</option> |
| 76 <option value="r941_prom_variant_g360">r941_prom_variant_g360</option> | |
| 74 </param> | 77 </param> |
| 75 </xml> | 78 </xml> |
| 76 <xml name="reference"> | 79 <xml name="reference"> |
| 77 <conditional name="reference_source"> | 80 <conditional name="reference_source"> |
| 78 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> | 81 <param name="reference_source_selector" type="select" label="Choose the source for the reference genome"> |