Mercurial > repos > iuc > medaka_variant_pipeline

diff convert_VCF_info_fields.py @ 8:1040a307be0c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e0684fe95538cf97b1199ad1072d3da6d1619443"
author iuc
date Tue, 23 Feb 2021 20:13:07 +0000
parents 08e0d74aac22
children 7623e5888be9
line wrap: on
line diff
--- a/convert_VCF_info_fields.py	Mon Feb 22 19:58:33 2021 +0000
+++ b/convert_VCF_info_fields.py	Tue Feb 23 20:13:07 2021 +0000
@@ -86,7 +86,7 @@
                     if dpsp == 0:
                         info.append("AF=NaN")
                     else:
-                        af = dp4[2] + dp4[3] / dpsp
+                        af = (dp4[2] + dp4[3]) / dpsp
                         info.append("AF=%.6f" % (af))
                     if dpspf == 0:
                         info.append("FAF=NaN")