Mercurial > repos > iuc > medaka_variant_pipeline

diff test-data/annotate_vcf_test.vcf @ 3:148f32860445 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
author iuc
date Tue, 01 Sep 2020 03:06:38 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/annotate_vcf_test.vcf	Tue Sep 01 03:06:38 2020 -0400
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+##fileformat=VCFv4.1
+##medaka_version=1.0.3
+##contig=<ID=NC_045512.2>
+##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype.">
+##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMPLE
+NC_045512.2	45	.	G	C	46.359	PASS		GT:GQ	1:46
+NC_045512.2	685	.	AAAGTCATTT	A	260.487	PASS		GT:GQ	1:260
+NC_045512.2	1813	.	TA	T	11.034	PASS		GT:GQ	1:11