comparison macros.xml @ 2:07d36bc47eaf draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 374a2824a264468316f04281ed211079015503b5"

1:1930eb870dca

                <param name="blast1" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for forward read"/>
                <param name="blast2" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for reverse read"/>
            </when>
        </conditional>
    </macro>
    <macro name="long_reads_param">
        <param argument="--longReads" type="boolean" truevalue="--longReads" falsevalue="" checked="false" label="Parse and analyse input reads as long reads?"/>
    </macro>
    <macro name="classification_options">
        <option value="EC" selected="true">EC</option>
        <option value="EGGNOG">EGGNOG</option>
        <option value="GTDB">GTDB</option>

                <add value="|" />
            </valid>
            <mapping initial="none">
                <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;" />
            </mapping>
       </sanitizer>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1038/nmeth.3176</citation>
            <citation type="doi">10.1101/gr.120618.111</citation>

2:07d36bc47eaf

                <param name="blast1" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for forward read"/>
                <param name="blast2" type="data" format="daa,blastxml,sam,tabular,txt" label="Blast file for reverse read"/>
            </when>
        </conditional>
    </macro>
    <macro name="input_daa_param">
        <param argument="--in" type="data" format="daa" label="Input DAA file"/>
    </macro>
    <macro name="long_reads_param">
        <param argument="--longReads" type="boolean" truevalue="--longReads" falsevalue="" checked="false" label="Parse and analyse input reads as long reads?"/>
    </macro>
    <macro name="max_matches_per_read_param">
        <param argument="--maxMatchesPerRead" type="integer" value="100" label="Maximum matches per read"/>
    </macro>
    <macro name="only_named_classifications_param">
        <param argument="--only" type="text" value="" label="Names of classifications to use" help="Leave blank to use all classifications">
            <sanitizer>
                <valid initial="@VALIDINITIAL@">
                    <remove value="&apos;" />
                    <add value="|" />
                </valid>
                <mapping initial="none">
                    <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;" />
                </mapping>
            </sanitizer>
        </param>
    </macro>
    <macro name="classification_options">
        <option value="EC" selected="true">EC</option>
        <option value="EGGNOG">EGGNOG</option>
        <option value="GTDB">GTDB</option>

                <add value="|" />
            </valid>
            <mapping initial="none">
                <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;" />
            </mapping>
        </sanitizer>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1038/nmeth.3176</citation>
            <citation type="doi">10.1101/gr.120618.111</citation>