comparison blast2rma.xml @ 4:45fd617493eb draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 6b0c3dbd5bdf9c272cf32f39e0004d504f953ff0

3:d326b943f5e2

            <param name="read1" value="13-1941-6_S4_L001_R1_600000.fastq.gz" ftype="fastqsanger.gz"/>
            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="19596"/>
                </assert_contents>
            </output>
        </test>
        <!-- Single dataset input, contaminants file -->
        <test expect_num_outputs="1">

            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <param name="conFile" value="contaminants.txt" ftype="txt"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="19596"/>
                </assert_contents>
            </output>
        </test>
        <!-- Dataset pair input -->
        <test expect_num_outputs="1">

            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blast2" value="blast_R2.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="39887"/>
                </assert_contents>
            </output>
        </test>
        <!-- List of dataset pairs input -->
        <test expect_num_outputs="1">

            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blast2" value="blast_R2.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="39806"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>

4:45fd617493eb

            <param name="read1" value="13-1941-6_S4_L001_R1_600000.fastq.gz" ftype="fastqsanger.gz"/>
            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="19596" delta="25"/>
                </assert_contents>
            </output>
        </test>
        <!-- Single dataset input, contaminants file -->
        <test expect_num_outputs="1">

            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <param name="conFile" value="contaminants.txt" ftype="txt"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="19596" delta="25"/>
                </assert_contents>
            </output>
        </test>
        <!-- Dataset pair input -->
        <test expect_num_outputs="1">

            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blast2" value="blast_R2.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="39887" delta="25"/>
                </assert_contents>
            </output>
        </test>
        <!-- List of dataset pairs input -->
        <test expect_num_outputs="1">

            <param name="blast1" value="blast_R1.txt" ftype="txt"/>
            <param name="blast2" value="blast_R2.txt" ftype="txt"/>
            <param name="blastMode" value="BlastN"/>
            <output name="rma6_output" ftype="rma6">
                <assert_contents>
                    <has_size value="39806" delta="1"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>