comparison daa2rma.xml @ 1:10360f9989ee draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 5386f7bb4bf5bdd4b5303d0686c97fe5d9b99ca0"

0:e13ac00e6a4d

                </when>
            </conditional>
            <expand macro="long_reads_param"/>
            <expand macro="max_matches_per_read_param"/>
            <expand macro="classify_param"/>
            <expand macro="blast_params"/>
            <expand macro="min_max_params"/>
            <expand macro="lca_params"/>
            <expand macro="read_assignment_mode_param"/>
            <expand macro="con_file_param"/>
            <expand macro="mapdb_param"/>

    </inputs>
    <outputs>
        <data name="output" format="rma6"/>
    </outputs>
    <tests>
        <test>
            <param name="in" ftype="daa" value="input.daa"/>
            <output name="output" ftype="rma6">
                <assert_contents>
                    <has_size value="1487"/>
                </assert_contents>
            </output>
       </test>
        <test>
            <param name="in" ftype="daa" value="input.daa"/>
            <param name="longReads" value="true"/>
            <param name="minScore" value="25.0"/>
            <param name="maxExpected" value="0.05"/>
            <param name="lcaAlgorithm" value="weighted"/>

       </test>
    </tests>
    <help>
**What it does**

Computes a MEGAN RMA (RealMedia Audio) file from a DIOMAND DAA file, a proprietary file format developed by PowerISO Computing
for disk image files.  MEGAN uses an update of the original RMA file format known as RMA6.
    </help>
    <expand macro="citations"/>
</tool>

1:10360f9989ee

                </when>
            </conditional>
            <expand macro="long_reads_param"/>
            <expand macro="max_matches_per_read_param"/>
            <expand macro="classify_param"/>
            <expand macro="min_score_param"/>
            <expand macro="max_expected_param"/>
            <expand macro="min_percent_identity_param"/>
            <expand macro="top_percent_param"/>
            <expand macro="min_max_params"/>
            <expand macro="lca_params"/>
            <expand macro="read_assignment_mode_param"/>
            <expand macro="con_file_param"/>
            <expand macro="mapdb_param"/>

    </inputs>
    <outputs>
        <data name="output" format="rma6"/>
    </outputs>
    <tests>
        <test expect_num_outputs="1">
            <param name="in" ftype="daa" value="input.daa"/>
            <output name="output" ftype="rma6">
                <assert_contents>
                    <has_size value="1487"/>
                </assert_contents>
            </output>
       </test>
        <test expect_num_outputs="1">
            <param name="in" ftype="daa" value="input.daa"/>
            <param name="longReads" value="true"/>
            <param name="minScore" value="25.0"/>
            <param name="maxExpected" value="0.05"/>
            <param name="lcaAlgorithm" value="weighted"/>

       </test>
    </tests>
    <help>
**What it does**

Generates a MEGAN RMA (RealMedia Audio) file from a DIAMOND DAA file, a proprietary file format developed by PowerISO Computing
for disk image files.  MEGAN uses an update of the original RMA file format known as RMA6.
    </help>
    <expand macro="citations"/>
</tool>