comparison daa_meganizer.xml @ 1:f1b6527ba952 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 374a2824a264468316f04281ed211079015503b5"

0:ca7c839a75ab

--threads \${GALAXY_SLOTS:-8}
--tempStoreDir '.'
&& mv '$input_identifier' '$output'
    ]]></command>
    <inputs>
        <param argument="--in" type="data" format="daa" label="Input DAA file"/>
        <section name="advanced_options" title="Advanced options" expanded="false">
            <param argument="--metaDataFile" type="data" format="tabular" multiple="true" optional="true" label="Files containing metadata to be included in the output files"/>
            <expand macro="long_reads_param"/>
            <expand macro="classify_param"/>
            <expand macro="blast_params"/>
            <expand macro="min_max_params"/>
            <expand macro="lca_params"/>
            <expand macro="read_assignment_mode_param"/>
            <expand macro="con_file_param"/>
            <expand macro="mapdb_param"/>
            <param argument="--only" type="text" value="" label="Names of classifications to use" help="Leave blank to use all classifications">
                <expand macro="sanitize_query" validinitial="string.ascii_letters,string.punctuation"/>
            </param>
        </section>
    </inputs>
    <outputs>
        <data name="output" format="daa"/>
    </outputs>

1:f1b6527ba952

--threads \${GALAXY_SLOTS:-8}
--tempStoreDir '.'
&& mv '$input_identifier' '$output'
    ]]></command>
    <inputs>
        <expand macro="input_daa_param"/>
        <section name="advanced_options" title="Advanced options" expanded="false">
            <param argument="--metaDataFile" type="data" format="tabular" multiple="true" optional="true" label="Files containing metadata to be included in the output files"/>
            <expand macro="long_reads_param"/>
            <expand macro="classify_param"/>
            <expand macro="blast_params"/>
            <expand macro="min_max_params"/>
            <expand macro="lca_params"/>
            <expand macro="read_assignment_mode_param"/>
            <expand macro="con_file_param"/>
            <expand macro="mapdb_param"/>
            <expand macro="only_named_classifications_param"/>
        </section>
    </inputs>
    <outputs>
        <data name="output" format="daa"/>
    </outputs>