Mercurial > repos > iuc > megan_sam2rma
comparison sam2rma.xml @ 1:ef0443c0eaba draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megan commit 6b0c3dbd5bdf9c272cf32f39e0004d504f953ff0
| author | iuc |
|---|---|
| date | Sat, 27 Aug 2022 17:07:04 +0000 |
| parents | 4f0a8e401e2e |
| children |
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| 0:4f0a8e401e2e | 1:ef0443c0eaba |
|---|---|
| 188 <test expect_num_outputs="1"> | 188 <test expect_num_outputs="1"> |
| 189 <param name="sam1" ftype="sam" value="input1.sam"/> | 189 <param name="sam1" ftype="sam" value="input1.sam"/> |
| 190 <param name="read1" ftype="fastqsanger.gz" value="13-1941-6_S4_L001_R1_600000.fastq.gz"/> | 190 <param name="read1" ftype="fastqsanger.gz" value="13-1941-6_S4_L001_R1_600000.fastq.gz"/> |
| 191 <output name="output_single" ftype="rma6"> | 191 <output name="output_single" ftype="rma6"> |
| 192 <assert_contents> | 192 <assert_contents> |
| 193 <has_size value="885"/> | 193 <has_size value="885" delta="15"/> |
| 194 </assert_contents> | 194 </assert_contents> |
| 195 </output> | 195 </output> |
| 196 </test> | 196 </test> |
| 197 <!-- Dataset pair input --> | 197 <!-- Dataset pair input --> |
| 198 <test expect_num_outputs="2"> | 198 <test expect_num_outputs="2"> |
| 201 <param name="sam1" value="input1.sam" ftype="sam"/> | 201 <param name="sam1" value="input1.sam" ftype="sam"/> |
| 202 <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz"/> | 202 <param name="read2" value="13-1941-6_S4_L001_R2_600000.fastq.gz" ftype="fastqsanger.gz"/> |
| 203 <param name="sam2" value="input2.sam" ftype="sam"/> | 203 <param name="sam2" value="input2.sam" ftype="sam"/> |
| 204 <output name="output_forward" ftype="rma6"> | 204 <output name="output_forward" ftype="rma6"> |
| 205 <assert_contents> | 205 <assert_contents> |
| 206 <has_size value="805"/> | 206 <has_size value="805" delta="1"/> |
| 207 </assert_contents> | 207 </assert_contents> |
| 208 </output> | 208 </output> |
| 209 <output name="output_reverse" ftype="rma6"> | 209 <output name="output_reverse" ftype="rma6"> |
| 210 <assert_contents> | 210 <assert_contents> |
| 211 <has_size value="805"/> | 211 <has_size value="805" delta="1"/> |
| 212 </assert_contents> | 212 </assert_contents> |
| 213 </output> | 213 </output> |
| 214 </test> | 214 </test> |
| 215 <!-- List of dataset pairs input --> | 215 <!-- List of dataset pairs input --> |
| 216 <test expect_num_outputs="2"> | 216 <test expect_num_outputs="2"> |
| 223 </param> | 223 </param> |
| 224 <param name="sam1" value="input1.sam" ftype="sam"/> | 224 <param name="sam1" value="input1.sam" ftype="sam"/> |
| 225 <param name="sam2" value="input2.sam" ftype="sam"/> | 225 <param name="sam2" value="input2.sam" ftype="sam"/> |
| 226 <output name="output_forward" ftype="rma6"> | 226 <output name="output_forward" ftype="rma6"> |
| 227 <assert_contents> | 227 <assert_contents> |
| 228 <has_size value="805"/> | 228 <has_size value="805" delta="1"/> |
| 229 </assert_contents> | 229 </assert_contents> |
| 230 </output> | 230 </output> |
| 231 <output name="output_reverse" ftype="rma6"> | 231 <output name="output_reverse" ftype="rma6"> |
| 232 <assert_contents> | 232 <assert_contents> |
| 233 <has_size value="805"/> | 233 <has_size value="805" delta="1"/> |
| 234 </assert_contents> | 234 </assert_contents> |
| 235 </output> | 235 </output> |
| 236 </test> | 236 </test> |
| 237 </tests> | 237 </tests> |
| 238 <help> | 238 <help> |