Mercurial > repos > iuc > meme_dreme

annotate test-data/fimo_output_test2.html @ 5:f33d77dcacce draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:32:58 +0000
parents 3e5c80594237
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
1 <td style="padding-left: 5em; padding-right: 2em">alphabet = DNA</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
2 <td style="padding-left: 5em; padding-right: 2em">max stored scores = 100000</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
3 </tr> <tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
4 <td style="padding-right: 2em">allow clobber = false</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
5 <td style="padding-left: 5em; padding-right: 2em">compute q-values = true</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
6 <td style="padding-left: 5em; padding-right: 2em">parse genomic coord. = false</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
7 </tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
8 <tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
9 <td style="padding-right: 2em">text only = false</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
10 <td style="padding-left: 5em; padding-right: 2em">scan both strands = true</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
11 <td style="padding-left: 5em; padding-right: 2em">max strand = false</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
12 </tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
13 <tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
14 <td style="padding-right: 2em">threshold type = p-value</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
15 <td style="padding-left: 5em; padding-right: 2em">output theshold = 0.0001</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
16 <td style="padding-left: 5em; padding-right: 2em">pseudocount = 0.1</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
17 </tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
18 <tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
19 <td style="padding-right: 2em">alpha = 1</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
20 <td style="padding-left: 5em; padding-right: 2em">verbosity = 2</td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
21 <td style="padding-left: 5em; padding-right: 2em"></td>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
22 </tr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
23
1
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff changeset
24 </table>
5
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
25 </pre>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
26 <p>
1
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff changeset
27 This information can be useful in the event you wish to report a
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff changeset
28 problem with the FIMO software.
5
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
29 </p>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
30 <hr>
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
iuc
parents: 2
diff changeset
31 <span style="background-color: #DDDDFF"><a href="#top_buttons"><b>Go to top</b></a></span>
1
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff changeset
32 </body>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
parents:
diff changeset
33 </html>