Mercurial > repos > iuc > meme_dreme

annotate test-data/fimo_output_test2.xml @ 5:f33d77dcacce draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:32:58 +0000
parents 3e5c80594237
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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1 <setting name="compute q-values">true</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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2 <setting name="parse genomic coord.">false</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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3 <setting name="text only">false</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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4 <setting name="scan both strands">true</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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5 <setting name="output threshold">0.0001</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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6 <setting name="threshold type">p-value</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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7 <setting name="max stored scores">100000</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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8 <setting name="pseudocount">0.1</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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9 <setting name="verbosity">2</setting>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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10 </settings>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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11 <sequence-data num-sequences="1" num-residues="16569" />
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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12 <alphabet name="DNA" like="dna">
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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13 <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
iuc
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14 <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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15 <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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16 <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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17 <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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18 <letter id="V" symbol="V" equals="ACG" name="Not T"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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19 <letter id="H" symbol="H" equals="ACT" name="Not G"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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20 <letter id="D" symbol="D" equals="AGT" name="Not C"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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21 <letter id="B" symbol="B" equals="CGT" name="Not A"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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22 <letter id="M" symbol="M" equals="AC" name="Amino"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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23 <letter id="R" symbol="R" equals="AG" name="Purine"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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24 <letter id="W" symbol="W" equals="AT" name="Weak"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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25 <letter id="S" symbol="S" equals="CG" name="Strong"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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26 <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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27 <letter id="K" symbol="K" equals="GT" name="Keto"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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28 </alphabet>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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29 <motif name="ACTAAYH" alt="DREME-1" width="7" best-possible-match="ACTAACA"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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30 <motif name="YTAACA" alt="DREME-2" width="6" best-possible-match="TTAACA"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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31 <motif name="TCTGT" alt="DREME-3" width="5" best-possible-match="TCTGT"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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32 <motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/>
cb8a2242bf03 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
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33 <motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/>
5
f33d77dcacce "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
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34 <motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/>