comparison dreme.xml @ 2:3e5c80594237 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 86a94f48321780dbe18ef5b099434c347ec2f4d0"

1:cb8a2242bf03

        <test>
            <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/>
            <param name="alphabet_type" value="-rna"/>
            <param name="norc" value="false"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="dreme_output_test1.html" lines_diff="22"/>
            <output name="txt_outfile" file="dreme_output_test1.txt" lines_diff="22"/>
            <output name="xml_outfile" file="dreme_output_test1.xml" lines_diff="22"/>
        </test>
        <test>
            <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/>
            <param name="alphabet_type" value="-rna"/>
            <param name="norc" value="false"/>
            <param name="options_type_selector" value="advanced"/>
            <param name="e_value_thr" value="0.00001"/>
            <param name="motif_min_k" value="4"/>
            <param name="motif_max_k" value="10"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="dreme_output_test2.html" lines_diff="22"/>
            <output name="txt_outfile" file="dreme_output_test2.txt" lines_diff="22"/>
            <output name="xml_outfile" file="dreme_output_test2.xml" lines_diff="22"/>
        </test>
    </tests>
    <help><![CDATA[
    DREME (Discriminative Regular Expression Motif Elicitation) discovers short, ungapped motifs (recurring, fixed-length patterns) that are relatively enriched in your sequences compared with shuffled sequences or given control sequences.

2:3e5c80594237

        <test>
            <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/>
            <param name="alphabet_type" value="-rna"/>
            <param name="norc" value="false"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="dreme_output_test1.html" compare="contains"/>
            <output name="txt_outfile" file="dreme_output_test1.txt" compare="contains"/>
            <output name="xml_outfile" file="dreme_output_test1.xml" compare="contains"/>
        </test>
        <test>
            <param name="pos_fasta_file" value="dreme_test_sites.fa" ftype="fasta"/>
            <param name="alphabet_type" value="-rna"/>
            <param name="norc" value="false"/>
            <param name="options_type_selector" value="advanced"/>
            <param name="e_value_thr" value="0.00001"/>
            <param name="motif_min_k" value="4"/>
            <param name="motif_max_k" value="10"/>
            <param name="non_commercial_use" value="True"/>
            <output name="html_outfile" file="dreme_output_test2.html" compare="contains"/>
            <output name="txt_outfile" file="dreme_output_test2.txt" compare="contains"/>
            <output name="xml_outfile" file="dreme_output_test2.xml" compare="contains"/>
        </test>
    </tests>
    <help><![CDATA[
    DREME (Discriminative Regular Expression Motif Elicitation) discovers short, ungapped motifs (recurring, fixed-length patterns) that are relatively enriched in your sequences compared with shuffled sequences or given control sequences.