Mercurial > repos > iuc > meme_dreme
comparison test-data/dreme_output_test1.xml @ 5:f33d77dcacce draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author | iuc |
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date | Sat, 09 Apr 2022 08:32:58 +0000 |
parents | 3e5c80594237 |
children |
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4:e383d4bc8682 | 5:f33d77dcacce |
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1 <dreme version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700"> | |
2 <model> | |
3 <negatives name="shuffled positive sequences" count="1000" from="shuffled"/> | |
4 <alphabet name="RNA" like="rna"> | |
5 <letter id="A" symbol="A" name="Adenine" colour="CC0000"/> | |
6 <letter id="C" symbol="C" name="Cytosine" colour="0000CC"/> | |
7 <letter id="G" symbol="G" name="Guanine" colour="FFB300"/> | |
8 <letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/> | |
9 <letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/> | |
10 <letter id="V" symbol="V" equals="ACG" name="Not U"/> | |
11 <letter id="H" symbol="H" equals="ACU" name="Not G"/> | |
12 <letter id="D" symbol="D" equals="AGU" name="Not C"/> | |
13 <letter id="B" symbol="B" equals="CGU" name="Not A"/> | |
14 <letter id="M" symbol="M" equals="AC" name="Amino"/> | |
15 <letter id="R" symbol="R" equals="AG" name="Purine"/> | |
16 <letter id="W" symbol="W" equals="AU" name="Weak"/> | |
17 <letter id="S" symbol="S" equals="CG" name="Strong"/> | |
18 <letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/> | |
19 <letter id="K" symbol="K" equals="GU" name="Keto"/> | |
20 </alphabet> | |
21 <strands>none</strands> | |
22 <background A="0.221" C="0.245" G="0.221" U="0.312" from="dataset"/> | |
23 <stop evalue="0.05"/> | |
24 <ngen>100</ngen> | |
25 <add_pv_thresh>0.01</add_pv_thresh> | |
26 <seed>1</seed> | |
27 </model> | |
28 <motifs> | 1 <motifs> |
29 <motif id="m01" alt="DREME-1" seq="UUYUCY" length="6" nsites="459" p="387" n="210" pvalue="2.6e-018" evalue="1.2e-013" unerased_evalue="1.2e-013"> | 2 <motif id="m01" alt="DREME-1" seq="UUYUCY" length="6" nsites="459" p="387" n="210" pvalue="2.6e-018" evalue="1.2e-013" unerased_evalue="1.2e-013"> |
30 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/> | 3 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/> |
31 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/> | 4 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/> |
32 <pos A="0.000000" C="0.294118" G="0.000000" U="0.705882"/> | 5 <pos A="0.000000" C="0.294118" G="0.000000" U="0.705882"/> |
67 <match seq="GCUGGA" p="33" n="14" pvalue="3.6e-003" evalue="1.5e+002"/> | 40 <match seq="GCUGGA" p="33" n="14" pvalue="3.6e-003" evalue="1.5e+002"/> |
68 <match seq="CCUGGA" p="32" n="15" pvalue="8.6e-003" evalue="3.5e+002"/> | 41 <match seq="CCUGGA" p="32" n="15" pvalue="8.6e-003" evalue="3.5e+002"/> |
69 <match seq="CAUGGA" p="29" n="13" pvalue="9.1e-003" evalue="3.7e+002"/> | 42 <match seq="CAUGGA" p="29" n="13" pvalue="9.1e-003" evalue="3.7e+002"/> |
70 </motif> | 43 </motif> |
71 </motifs> | 44 </motifs> |
72 </dreme> |