Mercurial > repos > iuc > meme_dreme
comparison test-data/meme_output_test1.html @ 5:f33d77dcacce draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author | iuc |
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date | Sat, 09 Apr 2022 08:32:58 +0000 |
parents | 3e5c80594237 |
children |
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4:e383d4bc8682 | 5:f33d77dcacce |
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1 <!DOCTYPE HTML> | 1 <script> |
2 <html> | 2 { |
3 <head> | 3 $("opt_mod").className = data.options.mod; |
4 <meta charset="UTF-8"> | 4 $("opt_objfun").textContent = data.options.objfun; |
5 <title>MEME</title> | 5 $("opt_spfun").textContent = data.options.spfun; |
6 <script> | 6 $("opt_strand").className = (current_alphabet.has_complement() ? (data.options.revcomp ? "both" : "given") : "none"); |
7 // @JSON_VAR data | 7 $("opt_nmotifs").textContent = data.options.nmotifs; |
8 var data = { | 8 $("opt_evt").textContent = (typeof data.options.evt === "number" ? data.options.evt : "no limit"); |
9 "program": "MEME", | 9 $("opt_minw").textContent = data.options.minw; |
10 "version": "5.0.5", | 10 $("opt_maxw").textContent = data.options.maxw; |
11 "release": "Mon Mar 18 20:12:19 2019 -0700", | 11 $("opt_minsites").textContent = data.options.minsites; |
12 "stop_reason": "Stopped because requested number of motifs (1) found.", | 12 $("opt_maxsites").textContent = data.options.maxsites; |
13 "cmd": [ | 13 $("opt_wnsites").textContent = data.options.wnsites; |
14 "meme", | 14 $("opt_spmap").className = data.options.spmap; |
15 "-o", | 15 $("opt_spfuzz").textContent = data.options.spfuzz; |
16 "-nostatus", "-maxsize", "1000000" | 16 $("opt_prior").className = data.options.prior; |
17 ], | 17 if (data.options.prior == "dirichlet") { |
18 "options": { | 18 $("opt_prior_source").textContent = make_background_source("Source", data.background.source, true); |
19 }, | 19 } else { |
20 "motifs": [ | 20 $("opt_prior_source").textContent = (data.options.prior == "addone") ? "motif observed frequencies" : data.options.priors_source; |
21 "scan": [ | 21 } |
22 </script> | 22 $("opt_b").textContent = (data.options.b < 0) ? "not applicable" : (data.options.b == 0) ? "intrinsic strength" : data.options.b; |
23 var site_url = "http://meme-suite.org"; | 23 $("opt_maxiter").textContent = data.options.maxiter; |
24 | 24 $("opt_distance").textContent = data.options.distance; |
25 $("opt_searchsize").textContent = data.options.searchsize; | |
26 if (typeof data.options.csites != "undefined") { | |
27 $("opt_csites").textContent = data.options.csites; | |
28 } else { | |
29 $("opt_csites").parentElement.style.display = "none" | |
30 } | |
31 if (typeof data.options.wg != "undefined") { | |
32 $("opt_wg").textContent = data.options.wg; | |
33 } else { | |
34 $("opt_wg").parentElement.style.display = "none" | |
35 } | |
36 if (typeof data.options.ws != "undefined") { | |
37 $("opt_ws").textContent = data.options.ws; | |
38 } | |
39 else { | |
40 $("opt_ws").parentElement.style.display = "none" | |
41 } | |
42 if (typeof data.options.noendgaps != "undefined") { | |
43 $("opt_noendgaps").className = (data.options.noendgaps ? "on" : "off"); | |
44 } | |
45 else { | |
46 $("opt_noendgaps").parentElement.style.display = "none" | |
47 } | |
48 $("opt_substring").className = (data.options.substring ? "on" : "off"); | |
49 } | |
50 </script> | |
51 </div> | |
52 <!-- list information on this program --> | |
53 <div id="info_sec" class="bar"> | |
54 <div class="subsection"> | |
55 <h5 id="version">MEME version</h5> | |
56 <span id="ins_version"></span> | |
57 (Release date: <span id="ins_release"></span>)<br> | |
58 </div> | |
59 <script> | |
60 $("ins_version").innerHTML = data["version"]; | |
61 $("ins_release").innerHTML = data["release"]; | |
62 </script> | |
63 <div class="subsection" id="reference"> <script>print_citation("reference", "MEME");</script></div> | |
64 <div class="subsection"> | |
65 <h5 id="command">Command line</h5> | |
66 <textarea id="cmd" rows="5" style="width:100%;" readonly="readonly"> | |
67 </textarea> | |
68 <script>$("cmd").value = data["cmd"].join(" ");</script> | |
69 </div> | |
70 </div> | |
71 | |
72 </body> | |
73 </html> |