Mercurial > repos > iuc > meme_dreme

comparison test-data/dreme_output_test1.xml @ 6:fd05b142b3a3 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 93fe7345e2b6a97000975d978bf06513b3a442d9
author iuc
date Thu, 29 Aug 2024 10:19:55 +0000
parents f33d77dcacce
children
comparison
equal deleted inserted replaced
5:f33d77dcacce 6:fd05b142b3a3
1 <motifs>
2 <motif id="m01" alt="DREME-1" seq="UUYUCY" length="6" nsites="459" p="387" n="210" pvalue="2.6e-018" evalue="1.2e-013" unerased_evalue="1.2e-013">
3 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
4 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
5 <pos A="0.000000" C="0.294118" G="0.000000" U="0.705882"/>
6 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
7 <pos A="0.000000" C="1.000000" G="0.000000" U="0.000000"/>
8 <pos A="0.000000" C="0.474946" G="0.000000" U="0.525054"/>
9 <match seq="UUUUCC" p="147" n="75" pvalue="1.8e-007" evalue="8.1e-003"/>
10 <match seq="UUUUCU" p="155" n="94" pvalue="2.2e-005" evalue="1.0e+000"/>
11 <match seq="UUCUCU" p="94" n="51" pvalue="1.3e-004" evalue="6.1e+000"/>
12 <match seq="UUCUCC" p="75" n="42" pvalue="1.1e-003" evalue="5.0e+001"/>
13 </motif>
14 <motif id="m02" alt="DREME-2" seq="YAGG" length="4" nsites="793" p="600" n="416" pvalue="1.1e-016" evalue="5.1e-012" unerased_evalue="2.4e-012">
15 <pos A="0.000000" C="0.692308" G="0.000000" U="0.307692"/>
16 <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
17 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
18 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
19 <match seq="CAGG" p="441" n="304" pvalue="1.5e-010" evalue="6.6e-006"/>
20 <match seq="UAGG" p="232" n="165" pvalue="1.1e-004" evalue="4.7e+000"/>
21 </motif>
22 <motif id="m03" alt="DREME-3" seq="GAAGAW" length="6" nsites="89" p="81" n="22" pvalue="8.2e-010" evalue="3.4e-005" unerased_evalue="3.5e-004">
23 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
24 <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
25 <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
26 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
27 <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
28 <pos A="0.494382" C="0.000000" G="0.000000" U="0.505618"/>
29 <match seq="GAAGAU" p="45" n="7" pvalue="2.4e-008" evalue="9.9e-004"/>
30 <match seq="GAAGAA" p="40" n="16" pvalue="7.9e-004" evalue="3.3e+001"/>
31 </motif>
32 <motif id="m04" alt="DREME-4" seq="SMUGGA" length="6" nsites="119" p="110" n="47" pvalue="9.1e-008" evalue="3.7e-003" unerased_evalue="2.6e-005">
33 <pos A="0.000000" C="0.529412" G="0.470588" U="0.000000"/>
34 <pos A="0.428571" C="0.571429" G="0.000000" U="0.000000"/>
35 <pos A="0.000000" C="0.000000" G="0.000000" U="1.000000"/>
36 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
37 <pos A="0.000000" C="0.000000" G="1.000000" U="0.000000"/>
38 <pos A="1.000000" C="0.000000" G="0.000000" U="0.000000"/>
39 <match seq="GAUGGA" p="22" n="6" pvalue="1.7e-003" evalue="7.1e+001"/>
40 <match seq="GCUGGA" p="33" n="14" pvalue="3.6e-003" evalue="1.5e+002"/>
41 <match seq="CCUGGA" p="32" n="15" pvalue="8.6e-003" evalue="3.5e+002"/>
42 <match seq="CAUGGA" p="29" n="13" pvalue="9.1e-003" evalue="3.7e+002"/>
43 </motif>
44 </motifs>